HsaEX6063587 @ hg38
Exon Skipping
Gene
ENSG00000130723 | PRRC2B
Description
proline rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
Coordinates
chr9:131487856-131492260:+
Coord C1 exon
chr9:131487856-131488096
Coord A exon
chr9:131491425-131491580
Coord C2 exon
chr9:131492169-131492260
Length
156 bp
Sequences
Splice sites
3' ss Seq
CTGTCATTGTCGCCCAGCAGCTG
3' ss Score
5.81
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
ATCTCAGGTGTACATGCACCCCAGCCTGTCACCGCCCAGCACCATGATCCTCTCTGGGGGCACAGCCTTGAAGCCTCCATACTCGGCGTTCCCAGGCATGCAGCCCTTGGAGATGGTGAAGCCGCAGTCTGGCTCACCCTACCAGCCCATGAGCGGGAACCAAGCCCTGGTCTACGAGGGCCAGCTCAGCCAGGCTGCTGGCCTGGGTGCCTCCCAGATGTTGGACTCCCAGCTCCCACAG
Seq A exon
CTGACCATGCCACTGCCTCGGTACGGCTCCGGGCAGCAGCCACTGATCCTGCCCCAGTCTATTCAGCTGCCACCTGGGCAGAGCCTCTCCGTTGGGGCCCCCCGAAGGATTCCTCCGCCCGGGTCCCAGCCGCCAGTCCTGAACACCAGCAGAGAG
Seq C2 exon
CCCTCTCAGATGGAGATGAAAGGCTTCCACTTTGCCGACAGTAAACAGAATGTCCCTTCAGGAGGCCCCGTGCCATCGCCACAGACCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130723-'64-86,'64-85,71-86
Average complexity
S
Mappability confidence:
93%=90=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.599 A=0.983 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGCACCATGATCCTCTCTGGG
R:
TACTGTCGGCAAAGTGGAAGC
Band lengths:
247-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains