MmuEX0037396 @ mm9
Exon Skipping
Gene
ENSMUSG00000024393 | Prrc2a
Description
proline-rich coiled-coil 2A [Source:MGI Symbol;Acc:MGI:1915467]
Coordinates
chr17:35286645-35287271:-
Coord C1 exon
chr17:35287173-35287271
Coord A exon
chr17:35286854-35287066
Coord C2 exon
chr17:35286645-35286739
Length
213 bp
Sequences
Splice sites
3' ss Seq
TCACTGGGGATTTCTTGCAGATG
3' ss Score
8.03
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
GTACGCCAGGATCTGCCATCCCCTTCAGATTTTTACTCTACTCCTCTGCAGCCTGGTGGCCAGAGTGGCTTCCTTCCTTCGGGAGCCCCTGCTCAGCAG
Seq A exon
ATGCTTCTACCTGTGGTAGACTCACAGCTGCCAGTGGTGAACTTTGGCTCCCTGCCACCAGCGCCACCCCCTGCTCCACCCCCCCTTTCTCTGTTACCTGTGGGTCCTGCTCTCCAGCCCCCCAACCTAGCTGTGCGGCCCCCACCTGCTCCTGCTGCTCGGGTCTTACCTTCACCCGCTAGACCCTTCGCCCCTAGCTTGGGGCGAGCAGAG
Seq C2 exon
CTGCACCCAGTAGAACTAAAGCCTTTCCAGGATTACCGAAAGCTGAGCAGCAACCTTGGGGGTCCTGGGTCGTCACGGACTCCCCCATCTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024393-'37-37,'37-36,38-37
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.788 A=0.789 C2=0.969
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACGCCAGGATCTGCCATC
R:
CTTCCAGATGGGGGAGTCCG
Band lengths:
194-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: