HsaEX0007648 @ hg19
Exon Skipping
Gene
ENSG00000204469 | BAT2
Description
proline-rich coiled-coil 2A [Source:HGNC Symbol;Acc:13918]
Coordinates
chr6:31604287-31604913:+
Coord C1 exon
chr6:31604287-31604385
Coord A exon
chr6:31604510-31604722
Coord C2 exon
chr6:31604819-31604913
Length
213 bp
Sequences
Splice sites
3' ss Seq
ACCCAAATTTCTTGTTACAGATG
3' ss Score
8.45
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
GTACGCCAGGATCTGCCATCCCCTTCGGATTTTTATTCTACTCCTCTGCAGCCTGGTGGCCAAAGTGGCTTTCTCCCTTCAGGGGCTCCTGCCCAGCAG
Seq A exon
ATGCTTCTACCCATGGTAGACTCACAGCTGCCTGTGGTGAACTTTGGCTCCCTGCCGCCAGCACCACCTCCTGCCCCACCTCCCCTTTCTCTGTTACCTGTGGGCCCTGCTCTGCAGCCCCCCAGCCTGGCTGTGCGGCCCCCACCTGCTCCTGCTACTCGGGTGCTGCCTTCACCTGCCAGGCCCTTCCCCGCTAGCTTGGGGCGAGCAGAG
Seq C2 exon
CTGCATCCAGTGGAACTAAAGCCGTTCCAGGATTATCAAAAACTGAGCAGCAACCTTGGGGGACCTGGATCATCACGGACTCCCCCAACTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204469_CASSETTE5
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.897 A=0.859 C2=0.969
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACGCCAGGATCTGCCATC
R:
GTTGGGGGAGTCCGTGATGAT
Band lengths:
188-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)