RnoEX0070282 @ rn6
Exon Skipping
Gene
ENSRNOG00000000852 | Prrc2a
Description
proline-rich coiled-coil 2A [Source:RGD Symbol;Acc:1303025]
Coordinates
chr20:5140472-5141090:-
Coord C1 exon
chr20:5140992-5141090
Coord A exon
chr20:5140681-5140893
Coord C2 exon
chr20:5140472-5140566
Length
213 bp
Sequences
Splice sites
3' ss Seq
TGACTGGGCATTTCTTGTAGATG
3' ss Score
7.11
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
GTACGCCAGGATCTGCCATCCCCTTCAGATTTTTACTCTACCCCTCTGCAGCCAGGTGGCCAGAGTGGCTTCCTTCCTTCAGGAGCCCCTGCGCAGCAG
Seq A exon
ATGCTTCTACCTGTGGTAGACTCTCAGCTGCCAGTGGTGAACTTCGGCTCCCTGCCGCCAGCGCCACCCCCTGCTCCACCTCCTCTTTCTCTGTTACCTGTGGGTCCTGCTCTCCAGCCCCCCAATCTGGCTGTGCGGCCCCCACCTGCTCCTGCTGCACGGGTCTTACCTTCACCCGCCAGGCCCTTTCCCGCTAGCTTGGGGCGAGCGGAG
Seq C2 exon
CTGCATCCAGTAGAGCTAAAGCCTTTCCAGGATTACCGAAAGCTGAGCAGCAACCTTGGGGGTCCTGGGTCATCACGGGCTCCCCCATCTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000852_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.788 A=0.789 C2=0.969
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACGCCAGGATCTGCCATC
R:
CTTCCAGATGGGGGAGCCC
Band lengths:
194-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]