BtaEX6098510 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019682 | PRRC2A
Description
proline-rich coiled-coil 2A [Source:HGNC Symbol;Acc:HGNC:13918]
Coordinates
chr23:27476265-27476921:-
Coord C1 exon
chr23:27476823-27476921
Coord A exon
chr23:27476473-27476685
Coord C2 exon
chr23:27476265-27476359
Length
213 bp
Sequences
Splice sites
3' ss Seq
TGCCCTGTTTCTCATTACAGATG
3' ss Score
11.32
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
GTGCGACAGGATCTGCCATCCCCCTCAGATTTTTATTCTGCTCCTCTGCAGCCTGGTGGCCAAAGTGGCTTCCTCCCCTCAGGAGCCCCTGCCCAGCAG
Seq A exon
ATGCTTCTGCCCATGGTGGACTCACAGCTGCCTGTGGTGAACTTTGGCTCCCTGCCACCGGCACCACCTCCTGCCCCACCCCCTCTCTCTCTGTTACCTGTGGGCCCTCCTCTGCAGCCCCCCAGTCTGGCTGTGCGGCCCCCACCTGCTCCTGCTACTCGGGTGCTGCCTTCACCTGCCAGGCCCTTCGGCCCTAGCTTGGGGCGAGCAGAG
Seq C2 exon
TTGCACCCAGTAGAACTGAAGCCGTTCCAGGATTATCGAAAACTGAATAGCAACCTTGGGGGACCTGGGTCATCACGGACTCCCCCATCTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019682-'33-43,'33-42,34-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.788 A=0.859 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCGACAGGATCTGCCATC
R:
GATGGGGGAGTCCGTGATGA
Band lengths:
188-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]