DreEX6044471 @ danRer10
Exon Skipping
Gene
ENSDARG00000043220 | kcnh5a
Description
potassium voltage-gated channel, subfamily H (eag-related), member 5a [Source:ZFIN;Acc:ZDB-GENE-061106-2]
Coordinates
chr20:20127325-20200793:-
Coord C1 exon
chr20:20200701-20200793
Coord A exon
chr20:20193578-20194007
Coord C2 exon
chr20:20127325-20127524
Length
430 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTTTTTCTTCTCCAGGGT
3' ss Score
12.82
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
GACACCTTTGTAGACTCCTCTGCTGTGGGTCACTTGCCATCTGCAGGCCATTCTCCACGAAACGCCACACGTGCGGAGGATTCAGTGCTGCCC
Seq A exon
GGTCTCAGCAGTCTGTTCAGCTCATTGAAAGTGGTGCGTTTACTCCGCCTGGGTCGAGTTGCTCGCAAACTGGACCACTATCTGGAATATGGTGCTGCTGTGTTGGTTTTGCTGGTGTGTGTCTTTGGCCTGGTGGCACATTGGCTGGCCTGCATCTGGTACAGCATTGGAGATTACGAGGTCATCGATGAAGCCACCAATAGCCTCAAGACGGACAGCTGGCTTTATCAGTTAGCCATTAGCATTGGGACGCCGTACCGCTATAACGCCAGCGGCTCAGGCCATTGGGAAGGTGGACCAAGCAAACACACGCTCTACATTTCATCTCTCTATTTCACCATGACCAGTCTCACCACTATTGGCTTTGGCAACATTGCACCAACCACTGACGGGGAGAAGATCTTCTCTGTGGCCATGATGATGGTGGGCT
Seq C2 exon
CTCTTCTGTACGCAACCATCTTTGGAAACGTGACCACCATCTTTCAGCAGATGTACACCAACACCAACCGCTACCATGAGATGCTGAACAACGTGAGAGACTTTCTGAAGCTCTATCAGGTGCCTAAAGGGCTGAGCGAGAGGGTTATGGACTACATCGTGTCCACGTGGGCCATGACTAAAGGCATAGACACAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000043220-'6-10,'6-8,7-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(12.0=100)
A:
PF0052026=Ion_trans=FE(57.0=100)
C2:
PF0052026=Ion_trans=PD(4.0=14.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCTTTGTAGACTCCTCTGCT
R:
TGTGTCTATGCCTTTAGTCATGGC
Band lengths:
286-716
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]