DreEX6047968 @ danRer10
Exon Skipping
Gene
ENSDARG00000060081 | crb2b
Description
crumbs family member 2b [Source:ZFIN;Acc:ZDB-GENE-060610-1]
Coordinates
chr8:2805483-2813139:+
Coord C1 exon
chr8:2805483-2805622
Coord A exon
chr8:2812110-2812292
Coord C2 exon
chr8:2813026-2813139
Length
183 bp
Sequences
Splice sites
3' ss Seq
CTTCTTGTGGTTTATTTCAGGTT
3' ss Score
10.6
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GTATGAGTGTGACTGCAGTGGCACTGGATTCATGGGCTTTTTCTGTGATATTGACATCCCCGAGTGTTCTTCTGACCCCTGTCAACATGGCGCCACCTGCCTGGAGGGTGTAAACCACTACACCTGCATCTGCTGGACAG
Seq A exon
GTTATGAAGGAGTGAACTGTGAGCTGGATGTGGACGAGTGTGTTTCTCAGCCATGTGAGAATGAAGGCCAGTGTTTCCAGCGCTCAGACTCCAGCCTCTACAGAGTTCTGCCTGAACTGGACACTGACTTCAGCTTCCAGAGCGCAGCCGGTTACCTGTGCCAGTGCGTATCTGGCTTCACAG
Seq C2 exon
GTGAAAACTGCTCAGTGAATGTGAATGAATGCGAATCTGCGCCATGTGAGAACGGAGGATCTTGTGAAGATCTCGTCAATGCTTTTCAATGCTCATGTCCCCCAGGGTTCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060081-'5-5,'5-4,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(37.9=22.9),PF0000822=EGF=PU(80.6=52.1)
A:
PF0000822=EGF=PD(16.1=8.1),PF0000822=EGF=PU(94.1=77.4)
C2:
PF0000822=EGF=PD(3.9=5.1),PF0000822=EGF=PU(92.1=89.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGAGTGTGACTGCAGTGGC
R:
CTGGGGGACATGAGCATTGAA
Band lengths:
244-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]