DreEX6049329 @ danRer10
Exon Skipping
Gene
ENSDARG00000043130 | notch2
Description
notch 2 [Source:ZFIN;Acc:ZDB-GENE-000329-4]
Coordinates
chr8:19539401-19558572:+
Coord C1 exon
chr8:19539401-19539479
Coord A exon
chr8:19557635-19557900
Coord C2 exon
chr8:19558234-19558572
Length
266 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTGCGTGTGTTTCAGGTG
3' ss Score
12.61
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
Exon sequences
Seq C1 exon
CTCTGCAGTGTATCGACCACGAGAAGCCCTGTGTGAATGGTACCTGTGTCATCTCAAGCAACGGGACACACTACTGCAG
Seq A exon
GTGTGCTCCTGGTTTCTTAGGGGAGTACTGTCATCACAGTGACCCTTGTAATCTGTTGTATTGTAAAAATGGAGGAGAGTGCAAGGTGAGCGTGGCCGGTGTCCCTGGGAGCCCCTCATGCGTGTGTCCTCTGGGCTTTGCGGGTGAGCACTGCGAAATCCAGAAAAACTCCACCTGCTACCCCAATAACCCTTGCACCAATGGAGGAAAGTGCTTGCTCCTTCCCAACGACCAATACAAATGCCAGTGTGCCCTTGGGTGGACAG
Seq C2 exon
GTCAGCATTGTGAGCAAGAGGACGCATGTCTGTCCAGCCCATGTGCCAACAAGGGTATATGCAATGCTCTGCCAAATCGCGAATACTCTTGTACCTGTGCGCCTGGTTTTCATGGTTCCCGTTGTCTTAACGACACAGACGAGTGTGTGGACCCGTTAGTATGTAAGAACAAAGGCGTTTGTGTGAACACCATAGGCTCATATCGATGCAACTGCCAACCTGGCTTCACCGGATTGGACTGCGGGAGTCCTTACTTCCCCTGCTCTCCGTCCCCCTGCCAAAATGGTGGGACCTGCCGGCAAACAACAGAAACCACCTATGTATGCCACTGCCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000043130-'1-3,'1-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PU(69.7=85.2)
A:
PF0000822=EGF=PD(27.3=10.0),PF0000822=EGF=WD(100=38.9),PF0000822=EGF=PU(90.9=33.3)
C2:
PF0000822=EGF=PD(6.1=1.8),PF0000822=EGF=WD(100=28.1),PF0764510=EGF_CA=WD(100=38.6),PF0000822=EGF=PU(81.2=22.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTCAAGCAACGGGACACAC
R:
AGCAGGGGAAGTAAGGACTCC
Band lengths:
293-559
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]