GgaEX6043607 @ galGal3
Exon Skipping
Gene
ENSGALG00000002922 | NOTCH2
Description
NA
Coordinates
chr8:4195006-4206585:+
Coord C1 exon
chr8:4195006-4195087
Coord A exon
chr8:4204759-4205018
Coord C2 exon
chr8:4206250-4206585
Length
260 bp
Sequences
Splice sites
3' ss Seq
TAATGTCTTTTCTACTGCAGGTG
3' ss Score
9.94
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
Exon sequences
Seq C1 exon
CTTTGCAGTGTATGGACGATTCCAAGCCTTGTGTTAATGAGGGAAAATGCATTCCTTATCAGAATGGTACAGGATATTGCAA
Seq A exon
GTGTCGAGAAGGCTATCTTGGAGACTACTGCCAGTACAGGAACCCCTGTGAAAGCAATACGTGTAAGAATGGGGGAACCTGTGAAACCACGTCTCTGATAGGAAAGGCCACCTGCAAATGTGCTCCAGGGTTCACAGGAGAGGACTGTCAATACTCTGAATCACACATCTGCTATGTGTCCCAGCCCTGCCTGAATGGAGGGACGTGTCATCCTCACAGCCAGGAAACATATGAGTGTGTCTGTCCTCCAGGTTACACAG
Seq C2 exon
GAAAGGACTGCCAGTGGATTGATGCCTGTACCTCTCAACCTTGTGCCAATGGAAGTACATGTACCGTGTCTGGACATAAGTTCTCCTGCATCTGTCAGTCTGGCTACACTGGCCAGAAGTGTGAGATAGATGTGAACGAATGTGCCACGTCAGGCCTTTGTCACCATGGTGGGACCTGCATCAATTTGCCTGGTTCGTTCCGATGCCAGTGTAAGCCAGGCTATACAGGGCATCGCTGCGAGAGCAATTATGTGCCGTGTTCTCCATCACCTTGCATGAATGGAGGAACTTGTCATCAAACAAGTGACTTCACCTTTGAGTGCAACTGTCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002922-'3-6,'3-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF079748=EGF_2=PU(68.6=85.7)
A:
PF079748=EGF_2=PD(28.6=11.4),PF0000822=EGF=WD(100=37.5),PF0000822=EGF=PU(90.9=34.1)
C2:
PF0000822=EGF=PD(6.1=1.8),PF0000822=EGF=WD(100=27.4),PF0764510=EGF_CA=WD(100=38.9),PF0000822=EGF=PU(81.2=23.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACGATTCCAAGCCTTGTGT
R:
TGCCCTGTATAGCCTGGCTTA
Band lengths:
301-561
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]