RnoEX6010770 @ rn6
Exon Skipping
Gene
ENSRNOG00000018835 | Notch2
Description
notch 2 [Source:RGD Symbol;Acc:3188]
Coordinates
chr2:200221473-200245483:+
Coord C1 exon
chr2:200221473-200221554
Coord A exon
chr2:200243345-200243604
Coord C2 exon
chr2:200245148-200245483
Length
260 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTTTTTAAAATACAGATG
3' ss Score
7.43
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
CTTTGCAGTGTCGAGGTGGTCAAGAGCCCTGTGTAAATGAGGGGACCTGTGTTACCTACCACAACGGCACAGGCTACTGCCG
Seq A exon
ATGTCCAGAGGGCTTCTTGGGAGAATATTGTCAACATCGAGACCCTTGTGAGAAGAACCGCTGTCAGAATGGTGGTACTTGTGTGACGCAGGCCATGTTGGGAAAAGCCACCTGTCGATGTGCTCCAGGGTTCACAGGGGAGGACTGCCAATACTCGACCTCTCACCCCTGTTTTGTTTCCCGCCCCTGTCAGAATGGAGGTACCTGCCACATGCTCAGCTGGGACACCTATGAGTGCACCTGTCAAGTTGGCTTCACAG
Seq C2 exon
GAAAGCAGTGTCAGTGGACAGATGTCTGTCTGTCTCATCCCTGTGAAAATGGAAGCACCTGTAGCTCTGTGGCCAACCAGTTCTCCTGCAGATGTCCTGCAGGCATCACAGGCCAGAAGTGTGACGCCGACATCAATGAATGTGACATTCCAGGACGCTGCCAACATGGAGGCACCTGCCTCAACCTTCCTGGGTCCTACCGATGCCAATGCCCTCAGGGCTTCACAGGCCAGCACTGTGACAGCCCGTACGTGCCCTGTGCACCCTCACCCTGCGTCAATGGAGGCACCTGCCGTCAGACTGGAGACTTCACTTCTGAATGCCATTGCCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018835-'3-3,'3-2,7-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0000822=EGF=WD(100=37.5),PF0000822=EGF=PU(90.9=34.1)
C2:
PF0000822=EGF=PD(6.1=1.8),PF0000822=EGF=WD(100=27.4),PF0764510=EGF_CA=WD(100=38.9),PF126612=hEGF=PU(46.2=5.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTGCAGTGTCGAGGTGGTC
R:
ATTGGCATCGGTAGGACCCAG
Band lengths:
292-552
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]