DreEX6050515 @ danRer10
Exon Skipping
Gene
ENSDARG00000042329 | BCR (1 of 2)
Description
breakpoint cluster region [Source:HGNC Symbol;Acc:HGNC:1014]
Coordinates
chr8:30576038-30579778:+
Coord C1 exon
chr8:30576038-30576097
Coord A exon
chr8:30577611-30577720
Coord C2 exon
chr8:30579639-30579778
Length
110 bp
Sequences
Splice sites
3' ss Seq
ATATTCATCACTCTTTCCAGATT
3' ss Score
7.74
5' ss Seq
TAAGTAAGT
5' ss Score
8.07
Exon sequences
Seq C1 exon
CTGGATCCGCAGTCGCTGCAGGGTAAAGACTGGCAGAGGACAGTAATCAGCATGAATGGG
Seq A exon
ATTGAGGTCAAGCTGTCTATGCGATTTACCAGCAGAGAGTTCAGTCTGAAGCGGATGCCCTCCAGAAAACAGTCTGGAGTGTTTGGAGTCAAAATCGGGGCCGTCACTAA
Seq C2 exon
ACGCGAACACTCCAAAGTGCCTCTGATTGTGAGACAGTGTGTGGAGGAGATCGAGCGCAGAGGGATGGAGGAAGTGGGCATCTATCGGGTCTCTGGTGTGGCCACAGACATCCAGGCCCTGAAAGCTGCATTTGATGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042329-'22-21,'22-20,23-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0062022=RhoGAP=PU(26.0=83.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGATCCGCAGTCGCTG
R:
TCAAATGCAGCTTTCAGGGCC
Band lengths:
195-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]