GgaEX6014161 @ galGal4
Exon Skipping
Gene
ENSGALG00000006695 | BCR
Description
breakpoint cluster region [Source:HGNC Symbol;Acc:HGNC:1014]
Coordinates
chr15:8585009-8586148:-
Coord C1 exon
chr15:8586089-8586148
Coord A exon
chr15:8585857-8585966
Coord C2 exon
chr15:8585009-8585148
Length
110 bp
Sequences
Splice sites
3' ss Seq
AGCTGCTCTCTTCTGTTCAGGTC
3' ss Score
9.19
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
CTGGACCCACAGACACTGCAGGACAAAGACTGGCAACGCACAGTCATCTCAATGAATGGA
Seq A exon
GTCGAAGTGAAGCTGTCAGTGAAGTTTACCAGTCGAGAGTTCAGCCTGAAGAGGATGCCATCACGGAAACAGACGGGGGTCTTTGGGGTCAAGATTGCTATTGTCACCAA
Seq C2 exon
GAGGGAGAGATCAAAGGTGCCTTACATAGTGCGCCAGTGTGTGGAGGAGATAGAACGCCGTGGAATGGAGGAGGTGGGCATCTACCGCGTCTCTGGGGTCGCAACCGATATCCAGGCTTTGAAAGCGGCCTTTGATGTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006695-'40-31,'40-30,41-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0062022=RhoGAP=PU(26.0=83.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCACAGACACTGCAGGACAAA
R:
TGACATCAAAGGCCGCTTTCA
Band lengths:
194-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]