DreEX6083898 @ danRer10
Exon Skipping
Gene
ENSDARG00000079286 | bcr
Description
breakpoint cluster region [Source:ZFIN;Acc:ZDB-GENE-040724-43]
Coordinates
chr21:17216621-17219004:+
Coord C1 exon
chr21:17216621-17216680
Coord A exon
chr21:17216768-17216877
Coord C2 exon
chr21:17218865-17219004
Length
110 bp
Sequences
Splice sites
3' ss Seq
TATACATCTGTTTTTTGAAGATT
3' ss Score
6.91
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
CTGGATCCTCAAATGCTCCAGGGTAAAGACTGGCAGAGAACAGTTATCCCTATGAATGGG
Seq A exon
ATTGAGGTGAAGATATCTATGAAGTTCACTAGTCGGGAGTTCAGCTTGAAGAGAATGCCCTCTCGGAAACCCATGGGCGTGTTTGGAGTAAATATCTCCACTGTAACAAA
Seq C2 exon
ACGGGAGCGCTCTAAAGTGCCCTACATCGTCAGACAGTGTCTAGAGGAAATCGAGAGAAGAGGAATGGAGGAAGTGGGTATCTACCGTGTCTCAGGAGTGGCCACAGACATCCAGGCACTCAAGACTGCCTTTGACACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079286-'25-24,'25-23,26-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0062022=RhoGAP=PU(26.0=83.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATCCTCAAATGCTCCAGG
R:
TCAAAGGCAGTCTTGAGTGCC
Band lengths:
194-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]