DreEX6054113 @ danRer10
Exon Skipping
Gene
ENSDARG00000038237 | tbc1d12a
Description
TBC1 domain family, member 12a [Source:ZFIN;Acc:ZDB-GENE-030131-3920]
Coordinates
chr17:23223429-23224551:-
Coord C1 exon
chr17:23224469-23224551
Coord A exon
chr17:23224133-23224250
Coord C2 exon
chr17:23223429-23223535
Length
118 bp
Sequences
Splice sites
3' ss Seq
TACACCTTTTCTTCATTTAGAGA
3' ss Score
7.6
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
AAACCTGCCAGCTAAATCAGAAGAGGAATCTCAAAGACACCGGCAGGAGTACAGTGAAATGGTTGCAGGGGCCAAGAGAAGGG
Seq A exon
AGATGAAAGAGGCGCAGAAGAAAAAGCGTCAAATGAAAGAACGGTACCGTCAGGAGGAGAACATCGCCAGTGCCATGGTGATCTGGAACTCTGAAGTCCTGCCTAACTGGGAGAGCAT
Seq C2 exon
GCGTAACACTCGGCGGGTACGCGACCTTTGGTGGCAGGGCGTTCCTCCCAGCGTCCGAGGAAAGGTCTGGTGCCTCGCCATCGGGAATGAACTCAACATCACTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000038237-'3-6,'3-4,4-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.425 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0056613=RabGAP-TBC=PU(8.8=54.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCCAGCTAAATCAGAAGAGG
R:
TGGAGTGATGTTGAGTTCATTCCC
Band lengths:
186-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]