GgaEX1057300 @ galGal3
Exon Skipping
Gene
ENSGALG00000006538 | TBC1D12
Description
NA
Coordinates
chr6:21155870-21160802:+
Coord C1 exon
chr6:21155870-21155952
Coord A exon
chr6:21160234-21160351
Coord C2 exon
chr6:21160696-21160802
Length
118 bp
Sequences
Splice sites
3' ss Seq
TAATATGTTTTCTTTAACAGAAA
3' ss Score
9.71
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
AAATCTTCCTGCCAAATCAGTGGAAGAAGCTTTACGTCACCGACAAGAATATGATGAAATGGTGGCAGAGGCAAAAAAACGAG
Seq A exon
AAATTAAAGAAGCACATAAAAGGAAGAAAATAATGAGAGAGCGTTTCAAGCAAGAAGACAATATTGCTAGTGCTATGGTGATTTGGGTCAATGAAATACTACCTAACTGGGAAGGCAT
Seq C2 exon
GCGTGCTACCCGGAGAGTTCGAGAGCTGTGGTGGCAGGGATTACCACCAAGTGTTCGTGGGAAAGTGTGGAGTCTAGCAGTGGGGAACGAGTTAAATATCACTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006538-'2-5,'2-4,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.241 A=0.037 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0056613=RabGAP-TBC=PU(8.8=54.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCCTGCCAAATCAGTGGA
R:
AGGAGTGATATTTAACTCGTTCCCC
Band lengths:
186-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]