DreEX0077397 @ danRer10
Exon Skipping
Gene
ENSDARG00000073771 | tbc1d12b
Description
TBC1 domain family, member 12b [Source:ZFIN;Acc:ZDB-GENE-121214-108]
Coordinates
chr12:5400213-5404117:-
Coord C1 exon
chr12:5404035-5404117
Coord A exon
chr12:5403237-5403354
Coord C2 exon
chr12:5400213-5400319
Length
118 bp
Sequences
Splice sites
3' ss Seq
TGTGCTACTTTTGTTCGCAGAGC
3' ss Score
9.53
5' ss Seq
CATGTAAGA
5' ss Score
5.58
Exon sequences
Seq C1 exon
GAACCTCCCTGCAAAGTCGGAGGAGGAAGCACAGCGCCACCGTCAGGAGTATGATGAGATGGTGGCGGAGGCCAAGAAGAGAG
Seq A exon
AGCTAAAAGAGGCTCAGAAGAAGAAAAAGCAGATGAAAGAAAGGTTTAAACAGGAAGAGAGCATCGCTAACGCCATGGTGGTTTGGAACACTGAAATCCTCCCTAACTGGGAGAGCAT
Seq C2 exon
GCGTGGCACACGGCGTGTGAGGGATCTGTGGTGGCAAGGTCTTCCTCCCAACGTGAGGGGTAAAGTCTGGAGTTTGGCCGTTGGGAATGAGCTGAACATCACCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000073771-'5-6,'5-5,6-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.425 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0056613=RabGAP-TBC=PU(8.9=54.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACCTCCCTGCAAAGTCGG
R:
GGTGATGTTCAGCTCATTCCCA
Band lengths:
186-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]