BtaEX6032857 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005493 | TBC1D14
Description
Bos taurus TBC1 domain family, member 14 (TBC1D14), mRNA. [Source:RefSeq mRNA;Acc:NM_001099176]
Coordinates
chr6:118278422-118282844:+
Coord C1 exon
chr6:118278422-118278504
Coord A exon
chr6:118279817-118279934
Coord C2 exon
chr6:118282738-118282844
Length
118 bp
Sequences
Splice sites
3' ss Seq
TTTTCATTTGTGATGTCTAGAGC
3' ss Score
5.12
5' ss Seq
AATGTAAGC
5' ss Score
6.12
Exon sequences
Seq C1 exon
AAATCTCCCAGCGAAGCCAGCTGAAGAAGCTCAGAAACACAGGCAGCAGTATGAAGAAATGGTGGTTCAGGCCAAAAAACGAG
Seq A exon
AGCTGAAAGAAGCCCAGAGGAGGAAAAAGCAGCTGGAAGAAAGATGCAGACTGGAGGAAAGTATTGGAAATGCAGTCCTCACTTGGAACAACGAGATTCTGCCCAACTGGGAAACAAT
Seq C2 exon
GTGGTGCTCTAGAAAAGTTCGAGATTTGTGGTGGCAGGGAATCCCTCCCAGCGTGAGAGGCAAGGTCTGGAGCTTAGCCATTGGCAACGAGTTAAACATCACTCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005493-'20-8,'20-7,21-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.793 A=0.150 C2=0.000
Domain overlap (PFAM):
C1:
PF085986=Sds3=FE(30.4=100)
A:
PF085986=Sds3=PD(39.1=90.0)
C2:
PF0056613=RabGAP-TBC=PU(10.8=54.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAAGAAGCTCAGAAACACAGG
R:
CGTGAGTGATGTTTAACTCGTTGC
Band lengths:
170-288
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]