GgaEX0022807 @ galGal4
Exon Skipping
Gene
ENSGALG00000015546 | TBC1D14
Description
TBC1 domain family member 14 [Source:RefSeq peptide;Acc:NP_001239243]
Coordinates
chr4:79482807-79486119:+
Coord C1 exon
chr4:79482807-79482889
Coord A exon
chr4:79484479-79484596
Coord C2 exon
chr4:79486013-79486119
Length
118 bp
Sequences
Splice sites
3' ss Seq
AAAAAATTGCTTTCCTGCAGAGC
3' ss Score
8.49
5' ss Seq
TATGTAAGA
5' ss Score
3.54
Exon sequences
Seq C1 exon
GAACCTCCCAGCAAAACCAGCAGAAGAAGCTCAGAAACACAGACAGCAGTACGAAGAAATGGTGGTTCAAGCAAAAAAAAGAG
Seq A exon
AGCTTAAAGAAGCCCAGAAGAGAAAGAAGCAACTGGAGGAACGTTGTAAGCTGGAAGATAGCATTGGCAATGCTGTTTTAACTTGGAACAATGAAATCTTGCCCAATTGGGAAACTAT
Seq C2 exon
GTGTTGTTCCCGTAAAGTTCGAGAGTTATGGTGGCAGGGCATTCCACCGAGCGTGAGAGGCAAAGTCTGGAGCTTGGCAATTGGCAACGAGTTAAACATCACCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015546_MULTIEX2-2/9=1-3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.770 A=0.125 C2=0.000
Domain overlap (PFAM):
C1:
PF085986=Sds3=FE(29.2=100)
A:
PF085986=Sds3=PD(35.4=85.0)
C2:
PF0056613=RabGAP-TBC=PU(11.0=54.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACCTCCCAGCAAAACCAGC
R:
GGGTGATGTTTAACTCGTTGCC
Band lengths:
187-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]