DreEX6006585 @ danRer10
Exon Skipping
Gene
ENSDARG00000003520 | tbc1d14
Description
TBC1 domain family, member 14 [Source:ZFIN;Acc:ZDB-GENE-030131-6136]
Coordinates
chr7:39422214-39423332:+
Coord C1 exon
chr7:39422214-39422296
Coord A exon
chr7:39422659-39422776
Coord C2 exon
chr7:39423226-39423332
Length
118 bp
Sequences
Splice sites
3' ss Seq
GCACTTGTGATTCTGTCCAGAGC
3' ss Score
5.4
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
GAATCTTCCTGCAAAACCTGAGGAAGAAGCCCAAAAACACAGACAACAATATGAGGAAATGGTGGCTCAAGCCAAGAAAAGAG
Seq A exon
AGCTGAAAGATGCCCAGAAACGAAAGAAACAGCTGGAGGACCGGTGTAAACTAGAGGAAAGCATTGGCAATGCTGCTCTCACCTGGAGTCAGGAGATATTACCCAACTGGCAAAGCAT
Seq C2 exon
GTGTTCATCGAAGCGGGTGAGGGATTTATGGTGGCAGGGTCTGCCACCCAGTGTGAGGGGTAAAGTCTGGAGTCTGGCAATAGGAAATGAATTGAACATCACAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000003520-'8-12,'8-11,9-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.375 C2=0.000
Domain overlap (PFAM):
C1:
PF085986=Sds3=FE(14.7=100)
A:
PF085986=Sds3=FE(20.4=100)
C2:
PF085986=Sds3=FE(18.8=100),PF0056613=RabGAP-TBC=PU(8.7=54.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCCTGCAAAACCTGAGGA
R:
CATCTGTGATGTTCAATTCATTTCCT
Band lengths:
187-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]