RnoEX0088808 @ rn6
Exon Skipping
Gene
ENSRNOG00000006400 | Tbc1d14
Description
TBC1 domain family, member 14 [Source:RGD Symbol;Acc:1309993]
Coordinates
chr14:79409630-79420077:+
Coord C1 exon
chr14:79409630-79409712
Coord A exon
chr14:79412227-79412344
Coord C2 exon
chr14:79419997-79420077
Length
118 bp
Sequences
Splice sites
3' ss Seq
ATTTTAATCACGATTTATAGAGC
3' ss Score
2.99
5' ss Seq
CATGTAAGC
5' ss Score
5.61
Exon sequences
Seq C1 exon
GAATCTCCCAGCAAAGCCAGCTGAAGAAGCTCAAAAGCACAGACAGCAGTATGAAGAGATGGTGGTGCAGGCTAAGAAACGAG
Seq A exon
AGCTTAAAGAAGCCCAGCGGCGGAAGAAACAGCTGGAGGAAAGGTGCAAGGTTGAAGAGAGCATTGGAAACGCCGTCCTCACCTGGAATAATGAGATCTTGCCTAACTGGGAAACCAT
Seq C2 exon
AGCTCTTTGACATCTGTCTTGCTCGGGCCAAGGAGCGGTGGCGGTCCCTCAGCACTGGAGGCTCAGAAGTGGAGAATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006400_MULTIEX3-1/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.841 A=0.275 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0056613=RabGAP-TBC=FE(11.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATCTCCCAGCAAAGCCAGC
R:
TCATTCTCCACTTCTGAGCCTC
Band lengths:
162-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]