DreEX6054857 @ danRer10

Exon Skipping

Gene

ENSDARG00000022000 | traf3

Description

TNF receptor-associated factor 3 [Source:ZFIN;Acc:ZDB-GENE-040801-257]

Coordinates

chr17:29215398-29217977:-

Coord C1 exon

chr17:29217903-29217977

Coord A exon

chr17:29215725-29215817

Coord C2 exon

chr17:29215398-29215538

Length

93 bp

Sequences

Splice sites

3' ss Seq

AATTGAATGGATTTTTCAAGGGG

3' ss Score

1.62

5' ss Seq

AAGGTAAAA

5' ss Score

8.38

Exon sequences

Seq C1 exon

CTGTCAAGTCACCAGCATGACTGTCCAAAGGCTCAGGTGACCTGTTCCTTCATTCGCTACGGATGCTCCTACAAG

Seq A exon

GGGCTGAATCAAGAGATGAGGGAGCATGAGTCCAGTTTTGCATCTGAGCATCTAAGAATGATGGCAGTCAGAAACACCACACTAGAAGCCAAG

Seq C2 exon

GTTGAAGATGTGAAGAGTGAGTTGATGGAGCGTTATAAAGTTCTGCCGAGTCTCAGCAGTCGTCTTGCTGAGGTGGAGCGTCAGTATGAGGAGATGAGAGAAAAGAACAGGCAGCTGGAGCAGAAGCTGGTCAGCATGCAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSDARG00000022000-'10-9,'10-8,11-9=AN

Average complexity

A_S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.258 C2=0.362

Domain overlap (PFAM):

C1:

PF073947=DUF1501=FE(9.0=100),PF041569=IncA=FE(13.1=100),PF086146=ATG16=FE(15.9=100),PF130941=CENP-Q=PU(6.7=44.0),PF061607=EzrA=PU(1.6=8.0)

A:

PF073947=DUF1501=FE(11.3=100),PF041569=IncA=FE(16.4=100),PF086146=ATG16=FE(19.9=100),PF130941=CENP-Q=FE(18.3=100),PF061607=EzrA=FE(23.6=100),PF041027=SlyX=PU(6.2=12.9)

C2:

PF073947=DUF1501=FE(17.3=100),PF041569=IncA=FE(25.1=100),PF086146=ATG16=FE(30.5=100),PF130941=CENP-Q=FE(28.0=100),PF061607=EzrA=FE(36.2=100),PF041027=SlyX=FE(71.9=100),PF153721=DUF4600=PU(30.5=53.2)

Main Inclusion Isoform:

ENSDARP00000038596