MmuEX0048691 @ mm9
Exon Skipping
Gene
ENSMUSG00000021277 | Traf3
Description
TNF receptor-associated factor 3 [Source:MGI Symbol;Acc:MGI:108041]
Coordinates
chr12:112489341-112493574:+
Coord C1 exon
chr12:112489341-112489415
Coord A exon
chr12:112490875-112490967
Coord C2 exon
chr12:112493434-112493574
Length
93 bp
Sequences
Splice sites
3' ss Seq
CCCCACTGTTGCTCTTGCAGGGT
3' ss Score
10.36
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
TTGAGTGCACACTTGTCCGAGTGTGTCAATGCCCCCAGCACCTGTAGTTTTAAGCGCTATGGCTGCGTTTTTCAG
Seq A exon
GGTACAAACCAGCAGATCAAGGCCCATGAGGCCAGCTCCGCGGTACAGCACGTGAACCTGCTGAAGGAGTGGAGCAACTCCCTGGAGAAGAAG
Seq C2 exon
GTTTCCCTGCTGCAGAATGAAAGTGTTGAGAAAAACAAGAGCATCCAAAGCCTGCACAACCAGATCTGCAGCTTTGAGATCGAGATTGAGAGGCAGAAGGAGATGCTCCGAAACAACGAGTCCAAGATCCTTCACCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021277-'10-14,'10-13,11-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.065 C2=0.000
Domain overlap (PFAM):
C1:
PF0314511=Sina=FE(34.8=100),PF101744=Cast=PU(0.7=4.0)
A:
PF0314511=Sina=FE(43.5=100),PF0149614=V_ATPase_I=PU(4.5=25.8),PF0205011=FliJ=PU(13.9=61.3),PF101744=Cast=FE(19.6=100)
C2:
PF0314511=Sina=PD(0.1=0.0),PF0149614=V_ATPase_I=FE(26.0=100),PF0205011=FliJ=FE(33.6=100),PF101744=Cast=FE(30.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTCCGAGTGTGTCAATGCC
R:
GGAGCATCTCCTTCTGCCTCT
Band lengths:
172-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: