RnoEX0093183 @ rn6
Exon Skipping
Gene
ENSRNOG00000008145 | Traf3
Description
Tnf receptor-associated factor 3 [Source:RGD Symbol;Acc:1304633]
Coordinates
chr6:135704177-135708783:+
Coord C1 exon
chr6:135704177-135704251
Coord A exon
chr6:135705659-135705751
Coord C2 exon
chr6:135708643-135708783
Length
93 bp
Sequences
Splice sites
3' ss Seq
ACCCGCCGTTGCTCTTGCAGGGT
3' ss Score
11.71
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
TTGAGTGCACACTTGTCCGAGTGTGTCAATGCCCCCAGCACCTGTAGTTTTAAGCGCTATGGCTGCGTTTTTCAG
Seq A exon
GGTACAAACCAGCAGATCAAGGCCCACGAGGCCAGCTCCGCGGTCCAGCACGTGAACCTGCTGAAGGAGTGGAGCAACTCCCTGGAGAAGAAG
Seq C2 exon
GTTTCCTTGCTGCAGAATGAAAGTGTTGAGAAAAACAAGAGCATACAAAGTCTGCACAACCAGATATGTAGCTTTGAGATTGAAATTGAGAGACAAAAGGAGATGCTTCGAAACAATGAGTCCAAAATCCTTCATTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008145-'26-15,'26-14,27-15
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF041569=IncA=FE(11.0=100),PF101744=Cast=PU(0.7=4.0)
A:
PF041569=IncA=FE(13.7=100),PF101744=Cast=FE(19.6=100),PF0205011=FliJ=PU(13.9=61.3),PF0149614=V_ATPase_I=PU(4.5=25.8)
C2:
PF041569=IncA=FE(21.0=100),PF101744=Cast=FE(30.1=100),PF0205011=FliJ=FE(33.6=100),PF0149614=V_ATPase_I=FE(26.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTCCGAGTGTGTCAATGCC
R:
CGAAGCATCTCCTTTTGTCTCTCA
Band lengths:
173-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]