HsaEX0066806 @ hg38
Exon Skipping
Gene
ENSG00000131323 | TRAF3
Description
TNF receptor associated factor 3 [Source:HGNC Symbol;Acc:HGNC:12033]
Coordinates
chr14:102889560-102897401:+
Coord C1 exon
chr14:102889560-102889634
Coord A exon
chr14:102891325-102891417
Coord C2 exon
chr14:102897261-102897401
Length
93 bp
Sequences
Splice sites
3' ss Seq
TCACATGTTTGCTCTCGCAGGGG
3' ss Score
9.5
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
Exon sequences
Seq C1 exon
TTGAGTGCACACTTGTCAGAGTGTGTCAATGCCCCCAGCACCTGTAGTTTTAAGCGCTATGGCTGCGTTTTTCAG
Seq A exon
GGGACAAACCAGCAGATCAAGGCCCACGAGGCCAGCTCCGCCGTGCAGCACGTCAACCTGCTGAAGGAGTGGAGCAACTCGCTCGAAAAGAAG
Seq C2 exon
GTTTCCTTGTTGCAGAATGAAAGTGTAGAAAAAAACAAGAGCATACAAAGTTTGCACAATCAGATATGTAGCTTTGAAATTGAAATTGAGAGACAAAAGGAAATGCTTCGAAATAATGAATCCAAAATCCTTCATTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000131323_MULTIEX2-5/7=4-7
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.057 C2=0.000
Domain overlap (PFAM):
C1:
PF0314511=Sina=FE(36.9=100)
A:
PF0217613=zf-TRAF=PD(1.8=3.2),PF086146=ATG16=FE(22.2=100),PF101744=Cast=FE(19.5=100),PF0149614=V_ATPase_I=PU(7.7=45.2),PF0205011=FliJ=PU(5.1=16.1)
C2:
PF086146=ATG16=FE(34.1=100),PF101744=Cast=FE(29.9=100),PF0149614=V_ATPase_I=FE(25.1=100),PF0205011=FliJ=FE(46.5=100),PF138511=GAS=PU(32.5=80.9)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGAGTGTGTCAATGCCCC
R:
TCGAAGCATTTCCTTTTGTCTCTCA
Band lengths:
172-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development