HsaEX0066806 @ hg19

Exon Skipping

Gene

ENSG00000131323 | TRAF3

Description

TNF receptor-associated factor 3 [Source:HGNC Symbol;Acc:12033]

Coordinates

chr14:103355897-103363738:+

Coord C1 exon

chr14:103355897-103355971

Coord A exon

chr14:103357662-103357754

Coord C2 exon

chr14:103363598-103363738

Length

93 bp

Sequences

Splice sites

3' ss Seq

TCACATGTTTGCTCTCGCAGGGG

3' ss Score

9.5

5' ss Seq

AAGGTGGGC

5' ss Score

7.93

Exon sequences

Seq C1 exon

TTGAGTGCACACTTGTCAGAGTGTGTCAATGCCCCCAGCACCTGTAGTTTTAAGCGCTATGGCTGCGTTTTTCAG

Seq A exon

GGGACAAACCAGCAGATCAAGGCCCACGAGGCCAGCTCCGCCGTGCAGCACGTCAACCTGCTGAAGGAGTGGAGCAACTCGCTCGAAAAGAAG

Seq C2 exon

GTTTCCTTGTTGCAGAATGAAAGTGTAGAAAAAAACAAGAGCATACAAAGTTTGCACAATCAGATATGTAGCTTTGAAATTGAAATTGAGAGACAAAAGGAAATGCTTCGAAATAATGAATCCAAAATCCTTCATTTACAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000131323_MULTIEX1-5/7=4-7

Average complexity

C1

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.045 C2=0.000

Domain overlap (PFAM):

C1:

PF086146=ATG16=PU(6.2=28.0),PF041569=IncA=FE(12.4=100),PF101744=Cast=PU(0.7=4.0)

A:

PF0217613=zf-TRAF=PD(1.8=3.2),PF086146=ATG16=FE(22.2=100),PF127182=Tropomyosin_1=PU(10.3=48.4),PF0149614=V_ATPase_I=PU(7.7=45.2),PF0205011=FliJ=PU(5.1=16.1),PF101744=Cast=FE(19.5=100)

C2:

PF086146=ATG16=FE(34.1=100),PF127182=Tropomyosin_1=FE(31.5=100),PF0149614=V_ATPase_I=FE(25.1=100),PF0205011=FliJ=FE(46.5=100),PF101744=Cast=FE(29.9=100),PF100464=BLOC1_2=PU(42.9=83.0),PF138511=GAS=PU(32.5=80.9)

Main Inclusion Isoform:

ENSP00000376500