HsaEX0066804 @ hg19

Exon Skipping

Gene

ENSG00000131323 | TRAF3

Description

TNF receptor-associated factor 3 [Source:HGNC Symbol;Acc:12033]

Coordinates

chr14:103342695-103369766:+

Coord C1 exon

chr14:103342695-103342862

Coord A exon

chr14:103352526-103352606

Coord C2 exon

chr14:103369592-103369766

Length

81 bp

Sequences

Splice sites

3' ss Seq

AGTACTTTCTCTCTCTGTAGAAA

3' ss Score

9.74

5' ss Seq

GAGGTAGGG

5' ss Score

7.81

Exon sequences

Seq C1 exon

GTGCATTTAAAAAATGATTGCCATTTTGAAGAACTTCCATGTGTGCGTCCTGACTGCAAAGAAAAGGTCTTGAGGAAAGACCTGCGAGACCACGTGGAGAAGGCGTGTAAATACCGGGAAGCCACATGCAGCCACTGCAAGAGTCAGGTTCCGATGATCGCGCTGCAG

Seq A exon

AAACACGAAGACACCGACTGTCCCTGCGTGGTGGTGTCCTGCCCTCACAAGTGCAGCGTCCAGACTCTCCTGAGGAGCGAG

Seq C2 exon

CGAGTGATAGACAGCCAAGCAGAGAAACTGAAGGAGCTTGACAAGGAGATCCGGCCCTTCCGGCAGAACTGGGAGGAAGCAGACAGCATGAAGAGCAGCGTGGAGTCCCTCCAGAACCGCGTGACCGAGCTGGAGAGCGTGGACAAGAGCGCGGGGCAAGTGGCTCGGAACACAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000131323_MULTIEX1-3/7=2-C2

Average complexity

C2

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

Show structural model

Features

Disorder rate (Iupred):

C1=0.000 A=0.000 C2=0.034

Domain overlap (PFAM):

C1:

PF0217613=zf-TRAF=PU(94.7=96.4),PF101744=Cast=PU(23.8=67.9),PF0205011=FliJ=PU(4.0=7.1),PF0149614=V_ATPase_I=PU(4.0=12.5)

A:

PF0217613=zf-TRAF=PD(1.8=3.7),PF0314511=Sina=PU(15.4=37.0)

C2:

PF086146=ATG16=PD(18.5=42.4),PF127182=Tropomyosin_1=FE(39.7=100),PF0149614=V_ATPase_I=FE(31.7=100),PF0205011=FliJ=PD(45.5=76.3),PF101744=Cast=FE(37.7=100),PF100464=BLOC1_2=PD(54.9=84.7),PF138511=GAS=FE(49.6=100)

Main Inclusion Isoform:

ENSP00000376500