GgaEX0017151 @ galGal3
Exon Skipping
Gene
ENSGALG00000011389 | TRAF3
Description
NA
Coordinates
chr5:52362895-52371731:+
Coord C1 exon
chr5:52362895-52363062
Coord A exon
chr5:52368808-52368888
Coord C2 exon
chr5:52371657-52371731
Length
81 bp
Sequences
Splice sites
3' ss Seq
GTTTGCTTTTTTCTCTATAGAAA
3' ss Score
10.38
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
ATGCATTTGAAAACTGATTGTCAGTTTGAAGAGCTTCCGTGTCCTCGTGCTGATTGTAAAGAAAAAATACTGAGAAAAGATTTGCCAGACCACGTAGAGAAGACCTGTAAATACCGAGAGACAACTTGTAAATACTGTAAAAGCCAAGTCCCAATGATTATGTTGCAG
Seq A exon
AAACATGAAGATACAGACTGCCCGTGTGTCATGGTTTCATGTCCTCATAAATGCAGTGTTAAAACACTCATGAGGAGTGAG
Seq C2 exon
TTGAATGCACATTTGTCAGAATGTATTAATGCCCCAAGTACCTGTAGTTTTAAGCGTTATGGCTGCACTTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011389-'11-15,'11-12,12-15
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0217613=zf-TRAF=PU(94.7=96.4)
A:
PF0217613=zf-TRAF=PD(1.8=3.7),PF0314511=Sina=PU(17.5=40.7),PF041569=IncA=PU(8.8=55.6)
C2:
PF0314511=Sina=FE(38.1=100),PF041569=IncA=FE(14.1=100),PF101744=Cast=PU(0.7=4.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGTCCTCGTGCTGATTGTA
R:
AAACTACAGGTACTTGGGGCA
Band lengths:
181-262
Functional annotations
There are 0 annotated functions for this event