RnoEX0093182 @ rn6
Exon Skipping
Gene
ENSRNOG00000008145 | Traf3
Description
Tnf receptor-associated factor 3 [Source:RGD Symbol;Acc:1304633]
Coordinates
chr6:135696308-135704251:+
Coord C1 exon
chr6:135696308-135696475
Coord A exon
chr6:135701434-135701514
Coord C2 exon
chr6:135704177-135704251
Length
81 bp
Sequences
Splice sites
3' ss Seq
GATTTCCTTTTTCTTTGTAGAAA
3' ss Score
9.35
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
GTGCACCTGAAAAACGAGTGTCAGTTTGAGGAACTCCCCTGCCTGCGTGCCGACTGCAAAGAGAAAGTACTGAGGAGAGACTTGCGGGATCACGTGGAAAAGGCCTGTAAATACCGAGAGGCCACGTGCGCCCACTGCAAGAGCCAAGTCCCCATGATCACACTGCAG
Seq A exon
AAACATGAAGACACGGATTGTCCCTGTGTGGTGGTGTCCTGCCCTCATAAGTGCAGCGTTCAGACTCTTCTGAGGAGTGAG
Seq C2 exon
TTGAGTGCACACTTGTCCGAGTGTGTCAATGCCCCCAGCACCTGTAGTTTTAAGCGCTATGGCTGCGTTTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008145-'24-13,'24-12,25-13
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0217613=zf-TRAF=PU(94.7=96.4),PF041569=IncA=PU(6.4=25.0)
A:
PF0217613=zf-TRAF=PD(1.8=3.7),PF041569=IncA=FE(11.9=100)
C2:
PF041569=IncA=FE(11.0=100),PF101744=Cast=PU(0.7=4.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTGAGGAGAGACTTGCGGG
R:
CGCAGCCATAGCGCTTAAAAC
Band lengths:
168-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]