DreEX0080960 @ danRer10
Exon Skipping
Gene
ENSDARG00000022000 | traf3
Description
TNF receptor-associated factor 3 [Source:ZFIN;Acc:ZDB-GENE-040801-257]
Coordinates
chr17:29217903-29218774:-
Coord C1 exon
chr17:29218610-29218774
Coord A exon
chr17:29218105-29218185
Coord C2 exon
chr17:29217903-29217977
Length
81 bp
Sequences
Splice sites
3' ss Seq
TTTGTCGTCTCTCTTTGCAGAAA
3' ss Score
12.66
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
Exon sequences
Seq C1 exon
GAGCATTTGGTAATTTGTCCATATTTCGAGGTGCCGTGTCCTTTGGGAAAGTGTAAGGAGAAGATGATGAGGAAAGATATGCCCGAGCACCTAAGCCGCAAATGCAAACACCGAGAGGTCACCTGTGAATTCTGCAGTCTCAAAATGGCCCTCACTGAATTACAG
Seq A exon
AAACACAAAGAAACCGTCTGTCCTGCATTTCCTGTAGCATGTCCTAATCATTGCTCGTTTTCTTCTATTCTAAGAAGTGAG
Seq C2 exon
CTGTCAAGTCACCAGCATGACTGTCCAAAGGCTCAGGTGACCTGTTCCTTCATTCGCTACGGATGCTCCTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000022000_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0217613=zf-TRAF=PU(94.6=96.4),PF073947=DUF1501=PU(15.4=74.5)
A:
PF0217613=zf-TRAF=PD(1.8=3.7),PF073947=DUF1501=FE(9.8=100),PF041569=IncA=PU(1.1=7.4),PF086146=ATG16=PU(0.1=0.0)
C2:
PF073947=DUF1501=FE(9.0=100),PF041569=IncA=FE(13.1=100),PF086146=ATG16=FE(15.9=100),PF130941=CENP-Q=PU(6.7=44.0),PF061607=EzrA=PU(1.6=8.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTGTCCTTTGGGAAAGTGT
R:
TGAGCCTTTGGACAGTCATGC
Band lengths:
167-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]