MmuEX0048695 @ mm10
Exon Skipping
Gene
ENSMUSG00000021277 | Traf3
Description
TNF receptor-associated factor 3 [Source:MGI Symbol;Acc:MGI:108041]
Coordinates
chr12:111243371-111255363:+
Coord C1 exon
chr12:111243371-111243538
Coord A exon
chr12:111248566-111248646
Coord C2 exon
chr12:111255223-111255363
Length
81 bp
Sequences
Splice sites
3' ss Seq
TATTCCCTTTTTCTTTGTAGAAA
3' ss Score
9.48
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
GTGCACCTAAAAAATGAATGTCAGTTTGAGGAACTTCCCTGTCTGCGTGCCGACTGCAAAGAAAAAGTACTGAGAAAAGACTTGCGGGATCACGTGGAAAAGGCCTGTAAATACCGCGAGGCCACGTGCAGTCACTGCAAGAGCCAAGTGCCCATGATCAAACTGCAG
Seq A exon
AAACATGAAGACACAGATTGTCCCTGTGTGGTGGTATCCTGCCCTCACAAGTGCAGCGTTCAGACTCTTCTAAGGAGTGAG
Seq C2 exon
GTTTCCCTGCTGCAGAATGAAAGTGTTGAGAAAAACAAGAGCATCCAAAGCCTGCACAACCAGATCTGCAGCTTTGAGATCGAGATTGAGAGGCAGAAGGAGATGCTCCGAAACAACGAGTCCAAGATCCTTCACCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021277_MULTIEX2-1/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0217613=zf-TRAF=PU(94.7=96.4)
A:
PF0217613=zf-TRAF=PD(1.8=3.7)
C2:
PF101744=Cast=FE(30.1=100),PF0205011=FliJ=FE(34.1=100),PF0149614=V_ATPase_I=FE(26.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGACTTGCGGGATCACGTG
R:
AAGCTGCAGATCTGGTTGTGC
Band lengths:
167-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types