GgaEX0017151 @ galGal4
Exon Skipping
Gene
ENSGALG00000011389 | TRAF3
Description
TNF receptor-associated factor 3 [Source:HGNC Symbol;Acc:HGNC:12033]
Coordinates
chr5:49760168-49777971:+
Coord C1 exon
chr5:49760168-49760335
Coord A exon
chr5:49764192-49764272
Coord C2 exon
chr5:49777797-49777971
Length
81 bp
Sequences
Splice sites
3' ss Seq
GTTTGCTTTTTTCTCTATAGAAA
3' ss Score
10.38
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
ATGCATTTGAAAACTGATTGTCAGTTTGAAGAGCTTCCGTGTCCTCGTGCTGATTGTAAAGAAAAAATACTGAGAAAAGATTTGCCAGACCACGTAGAGAAGACCTGTAAATACCGAGAGACAACTTGTAAATACTGTAAAAGCCAAGTCCCAATGATTATGTTGCAG
Seq A exon
AAACATGAAGATACAGACTGCCCGTGTGTCATGGTTTCATGTCCTCATAAATGCAGTGTTAAAACACTCATGAGGAGTGAG
Seq C2 exon
CGAGTGATAGACAGTCAAGCAGAGAAACTGAAAGAACTGGACAAAGAAATCCGTCCCTTCCGACAGAACTGGGAGGAGGCTGACAGCATGAAGAGCAGTGTGGAATCCCTCCAGAACAGAGTGACTGAGCTGGAAAGTGTTGACAAAACTGCGGGGCAAGGAGCTCGAAATACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011389_MULTIEX2-1/4=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.220
Domain overlap (PFAM):
C1:
PF0217613=zf-TRAF=PU(94.7=96.4)
A:
PF0217613=zf-TRAF=PD(1.8=3.7),PF0314511=Sina=PU(12.9=40.7)
C2:
PF101744=Cast=FE(36.5=100),PF0205011=FliJ=PD(46.0=78.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCAGACCACGTAGAGAAGA
R:
TCTTCATGCTGTCAGCCTCCT
Band lengths:
180-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]