BtaEX6078811 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013475 | TRAF3
Description
TNF receptor-associated factor 3 [Source:HGNC Symbol;Acc:HGNC:12033]
Coordinates
chr21:69233547-69241128:+
Coord C1 exon
chr21:69233547-69233714
Coord A exon
chr21:69238427-69238507
Coord C2 exon
chr21:69241054-69241128
Length
81 bp
Sequences
Splice sites
3' ss Seq
GGTCTCTCTTTCTCCTCCAGAAA
3' ss Score
10.42
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GTGCATTTGAAGAATGACTGCCAGTTTGAGGAGCTCCCGTGTGTCCGTGCCGACTGCAAAGAGAAAGTGCTGAGGAAGGACCTGCGTGACCACGTGGAGAAGGCCTGTAAATACCGCGAGGCCACGTGCAGCCACTGCAAGAGCCAGGTCCCCATGGTCACGCTGCAG
Seq A exon
AAACACGAAGACACGGAGTGTCCCTGCGTGGCAGTGTCCTGCCCACACAAGTGCAGCGTCCAGACCCTCCTGAGGAGCGAG
Seq C2 exon
TTGAGTGCACACTTGTCAGAGTGTGTCAATGCCCCCAGCACCTGTAGTTTTAAGCGCTATGGCTGCGTTTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013475-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0217613=zf-TRAF=PU(94.7=96.4),PF041569=IncA=PU(6.4=25.0)
A:
PF0217613=zf-TRAF=PD(1.8=3.7),PF041569=IncA=FE(11.9=100)
C2:
PF041569=IncA=FE(11.0=100),PF101744=Cast=PU(0.7=4.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTGAGGAGCTCCCGTGTG
R:
GGGGCATTGACACACTCTGAC
Band lengths:
180-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]