MmuEX0048695 @ mm9
Exon Skipping
Gene
ENSMUSG00000021277 | Traf3
Description
TNF receptor-associated factor 3 [Source:MGI Symbol;Acc:MGI:108041]
Coordinates
chr12:112481582-112489415:+
Coord C1 exon
chr12:112481582-112481749
Coord A exon
chr12:112486777-112486857
Coord C2 exon
chr12:112489341-112489415
Length
81 bp
Sequences
Splice sites
3' ss Seq
TATTCCCTTTTTCTTTGTAGAAA
3' ss Score
9.48
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
GTGCACCTAAAAAATGAATGTCAGTTTGAGGAACTTCCCTGTCTGCGTGCCGACTGCAAAGAAAAAGTACTGAGAAAAGACTTGCGGGATCACGTGGAAAAGGCCTGTAAATACCGCGAGGCCACGTGCAGTCACTGCAAGAGCCAAGTGCCCATGATCAAACTGCAG
Seq A exon
AAACATGAAGACACAGATTGTCCCTGTGTGGTGGTATCCTGCCCTCACAAGTGCAGCGTTCAGACTCTTCTAAGGAGTGAG
Seq C2 exon
TTGAGTGCACACTTGTCCGAGTGTGTCAATGCCCCCAGCACCTGTAGTTTTAAGCGCTATGGCTGCGTTTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021277-'8-12,'8-11,9-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0217613=zf-TRAF=PU(94.7=96.4)
A:
PF0217613=zf-TRAF=PD(1.8=3.7),PF0314511=Sina=PU(15.9=40.7)
C2:
PF0314511=Sina=FE(34.8=100),PF101744=Cast=PU(0.7=4.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGACTTGCGGGATCACGTG
R:
CTGAAAAACGCAGCCATAGCG
Band lengths:
168-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: