GgaEX0017154 @ galGal4
Exon Skipping
Gene
ENSGALG00000011389 | TRAF3
Description
TNF receptor-associated factor 3 [Source:HGNC Symbol;Acc:HGNC:12033]
Coordinates
chr5:49768934-49777971:+
Coord C1 exon
chr5:49768934-49769026
Coord A exon
chr5:49773540-49773680
Coord C2 exon
chr5:49777797-49777971
Length
141 bp
Sequences
Splice sites
3' ss Seq
AATTGTAGAATTTTTTCCAGGTG
3' ss Score
3.97
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GGAACAAACCAACAAATTAAAGCACATGAAGCCAGCTCAGCAGTGCAGCATGTTAACTTATTGAAAGAGTGGAGCAATGCTCTAGAAAATAAG
Seq A exon
GTGGCCTTGCTCCAGAATGAAAGTTTGGAAAAGAACAAGAGTATACAAACTTTACATAATCAGATTTGTAGCTTTGAAATAGAAATTGAAAGACAGAAGGAAATGCTACGGAATAATGAATCTAAAATACTTCATTTACAG
Seq C2 exon
CGAGTGATAGACAGTCAAGCAGAGAAACTGAAAGAACTGGACAAAGAAATCCGTCCCTTCCGACAGAACTGGGAGGAGGCTGACAGCATGAAGAGCAGTGTGGAATCCCTCCAGAACAGAGTGACTGAGCTGGAAAGTGTTGACAAAACTGCGGGGCAAGGAGCTCGAAATACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011389_MULTIEX2-4/4=3-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.220
Domain overlap (PFAM):
C1:
PF101744=Cast=FE(18.9=100),PF0205011=FliJ=PU(5.0=16.1)
A:
PF101744=Cast=FE(28.9=100),PF0205011=FliJ=FE(46.0=100)
C2:
PF101744=Cast=FE(36.5=100),PF0205011=FliJ=PD(46.0=78.0)
Main Skipping Isoform:
ENSGALT00000018576fB13153
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCACATGAAGCCAGCTCA
R:
GTATTTCGAGCTCCTTGCCCC
Band lengths:
248-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]