HsaEX0066808 @ hg19

Exon Skipping

Gene

ENSG00000131323 | TRAF3

Description

TNF receptor-associated factor 3 [Source:HGNC Symbol;Acc:12033]

Coordinates

chr14:103338254-103369766:+

Coord C1 exon

chr14:103338254-103338305

Coord A exon

chr14:103363598-103363738

Coord C2 exon

chr14:103369592-103369766

Length

141 bp

Sequences

Splice sites

3' ss Seq

TTAAAGAATTTCTTTTTTAGGTT

3' ss Score

8.86

5' ss Seq

CAGGTAAGA

5' ss Score

10.77

Exon sequences

Seq C1 exon

CTCTTCAAGTCCAAAATGTACAGCGTGTCAAGAGAGCATCGTTAAAGATAAG

Seq A exon

GTTTCCTTGTTGCAGAATGAAAGTGTAGAAAAAAACAAGAGCATACAAAGTTTGCACAATCAGATATGTAGCTTTGAAATTGAAATTGAGAGACAAAAGGAAATGCTTCGAAATAATGAATCCAAAATCCTTCATTTACAG

Seq C2 exon

CGAGTGATAGACAGCCAAGCAGAGAAACTGAAGGAGCTTGACAAGGAGATCCGGCCCTTCCGGCAGAACTGGGAGGAAGCAGACAGCATGAAGAGCAGCGTGGAGTCCCTCCAGAACCGCGTGACCGAGCTGGAGAGCGTGGACAAGAGCGCGGGGCAAGTGGCTCGGAACACAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000131323_MULTIEX1-7/7=C1-C2

Average complexity

C2

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.000 C2=0.034

Domain overlap (PFAM):

C1:

PF0009720=zf-C3HC4=PD(23.1=50.0)

A:

PF086146=ATG16=FE(34.1=100),PF127182=Tropomyosin_1=FE(31.5=100),PF0149614=V_ATPase_I=FE(25.1=100),PF0205011=FliJ=FE(46.5=100),PF101744=Cast=FE(29.9=100),PF100464=BLOC1_2=PU(42.9=83.0),PF138511=GAS=PU(32.5=80.9)

C2:

PF086146=ATG16=PD(18.5=42.4),PF127182=Tropomyosin_1=FE(39.7=100),PF0149614=V_ATPase_I=FE(31.7=100),PF0205011=FliJ=PD(45.5=76.3),PF101744=Cast=FE(37.7=100),PF100464=BLOC1_2=PD(54.9=84.7),PF138511=GAS=FE(49.6=100)

Main Inclusion Isoform:

ENSP00000376500