RnoEX6029832 @ rn6
Exon Skipping
Gene
ENSRNOG00000008145 | Traf3
Description
Tnf receptor-associated factor 3 [Source:RGD Symbol;Acc:1304633]
Coordinates
chr6:135705659-135713815:+
Coord C1 exon
chr6:135705659-135705751
Coord A exon
chr6:135708643-135708783
Coord C2 exon
chr6:135713641-135713815
Length
141 bp
Sequences
Splice sites
3' ss Seq
TGAAGAATTTTTTCCCTCAGGTT
3' ss Score
8.16
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GGTACAAACCAGCAGATCAAGGCCCACGAGGCCAGCTCCGCGGTCCAGCACGTGAACCTGCTGAAGGAGTGGAGCAACTCCCTGGAGAAGAAG
Seq A exon
GTTTCCTTGCTGCAGAATGAAAGTGTTGAGAAAAACAAGAGCATACAAAGTCTGCACAACCAGATATGTAGCTTTGAGATTGAAATTGAGAGACAAAAGGAGATGCTTCGAAACAATGAGTCCAAAATCCTTCATTTGCAG
Seq C2 exon
CGAGTAATAGACAGCCAAGCAGAGAAACTGAAAGAACTCGACAAGGAGATCCGTCCCTTCCGGCAGAACTGGGAGGAAGCAGACAGCATGAAGAGCAGTGTGGAATCCCTCCAGAACCGTGTGACTGAGCTAGAAAGCGTAGACAAAAGTGCAGGGCAGGCAGCTCGCAACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008145-'27-16,'27-15,29-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.034
Domain overlap (PFAM):
C1:
PF041569=IncA=FE(13.7=100),PF101744=Cast=FE(19.6=100),PF0205011=FliJ=PU(13.9=61.3),PF0149614=V_ATPase_I=PU(4.5=25.8)
A:
PF041569=IncA=FE(21.0=100),PF101744=Cast=FE(30.1=100),PF0205011=FliJ=FE(33.6=100),PF0149614=V_ATPase_I=FE(26.0=100)
C2:
PF041569=IncA=FE(26.5=100),PF101744=Cast=FE(37.9=100),PF0205011=FliJ=FE(42.3=100),PF0149614=V_ATPase_I=FE(32.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAACCAGCAGATCAAGGCC
R:
CCCTGCACTTTTGTCTACGCT
Band lengths:
246-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]