DreEX6054858 @ danRer10

Exon Skipping

Gene

ENSDARG00000022000 | traf3

Description

TNF receptor-associated factor 3 [Source:ZFIN;Acc:ZDB-GENE-040801-257]

Coordinates

chr17:29213149-29215817:-

Coord C1 exon

chr17:29215725-29215817

Coord A exon

chr17:29215398-29215538

Coord C2 exon

chr17:29213149-29213332

Length

141 bp

Sequences

Splice sites

3' ss Seq

GTGTGTGTGCGTGTGTGTAGGTT

3' ss Score

9.05

5' ss Seq

CAGGTGAGA

5' ss Score

9.22

Exon sequences

Seq C1 exon

GGGCTGAATCAAGAGATGAGGGAGCATGAGTCCAGTTTTGCATCTGAGCATCTAAGAATGATGGCAGTCAGAAACACCACACTAGAAGCCAAG

Seq A exon

GTTGAAGATGTGAAGAGTGAGTTGATGGAGCGTTATAAAGTTCTGCCGAGTCTCAGCAGTCGTCTTGCTGAGGTGGAGCGTCAGTATGAGGAGATGAGAGAAAAGAACAGGCAGCTGGAGCAGAAGCTGGTCAGCATGCAG

Seq C2 exon

ATGTTGATGAGCTCTCACTCAGAGAAGCTGCTGGAGGTGGAGATGGAGCTGCGGGAGCTCCGTCCACTGCGGGCCATGAGGGAGGAGGTGGAGACTCTCAGGGGCTCTGTGGAGAGCATGCGCTCGATGGTCTCTTCTCTTGACTCAAGCTGTGTCAATTCTGCTTCTGGTTCTCATACCCTGG

VastDB Features

Vast-tools module Information

Secondary ID

ENSDARG00000022000-'11-10,'11-9,12-10=AN

Average complexity

A_S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.258 A=0.362 C2=0.032

Domain overlap (PFAM):

C1:

PF073947=DUF1501=FE(11.3=100),PF041569=IncA=FE(16.4=100),PF086146=ATG16=FE(19.9=100),PF130941=CENP-Q=FE(18.3=100),PF061607=EzrA=FE(23.6=100),PF041027=SlyX=PU(6.2=12.9)

A:

PF073947=DUF1501=FE(17.3=100),PF041569=IncA=FE(25.1=100),PF086146=ATG16=FE(30.5=100),PF130941=CENP-Q=FE(28.0=100),PF061607=EzrA=FE(36.2=100),PF041027=SlyX=FE(71.9=100),PF153721=DUF4600=PU(30.5=53.2)

C2:

PF073947=DUF1501=FE(22.9=100),PF041569=IncA=FE(33.3=100),PF086146=ATG16=PD(30.5=74.2),PF130941=CENP-Q=FE(37.2=100),PF061607=EzrA=PD(35.4=72.6),PF041027=SlyX=PD(17.2=17.7),PF153721=DUF4600=PD(67.1=88.7)

Main Inclusion Isoform:

ENSDARP00000038596