MmuEX6083021 @ mm10
Exon Skipping
Gene
ENSMUSG00000021277 | Traf3
Description
TNF receptor-associated factor 3 [Source:MGI Symbol;Acc:MGI:108041]
Coordinates
chr12:111252664-111260811:+
Coord C1 exon
chr12:111252664-111252756
Coord A exon
chr12:111255223-111255363
Coord C2 exon
chr12:111260637-111260811
Length
141 bp
Sequences
Splice sites
3' ss Seq
ATTGAAGGATTTTTCCTCAGGTT
3' ss Score
3.89
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GGTACAAACCAGCAGATCAAGGCCCATGAGGCCAGCTCCGCGGTACAGCACGTGAACCTGCTGAAGGAGTGGAGCAACTCCCTGGAGAAGAAG
Seq A exon
GTTTCCCTGCTGCAGAATGAAAGTGTTGAGAAAAACAAGAGCATCCAAAGCCTGCACAACCAGATCTGCAGCTTTGAGATCGAGATTGAGAGGCAGAAGGAGATGCTCCGAAACAACGAGTCCAAGATCCTTCACCTGCAG
Seq C2 exon
CGGGTAATCGACAGCCAAGCAGAGAAACTGAAAGAACTGGACAAGGAGATCCGTCCCTTCCGGCAGAACTGGGAGGAAGCGGACAGCATGAAGAGCAGTGTGGAGTCCCTCCAGAACCGAGTGACTGAGCTGGAGAGCGTAGACAAAAGTGCGGGGCAGGCGGCTCGCAACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021277-'28-27,'28-26,29-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.052 A=0.000 C2=0.034
Domain overlap (PFAM):
C1:
PF101744=Cast=FE(19.6=100),PF0205011=FliJ=PU(13.3=58.1),PF0149614=V_ATPase_I=PU(4.5=25.8)
A:
PF101744=Cast=FE(30.1=100),PF0205011=FliJ=FE(34.1=100),PF0149614=V_ATPase_I=FE(26.0=100)
C2:
PF101744=Cast=FE(37.9=100),PF0205011=FliJ=FE(43.0=100),PF0149614=V_ATPase_I=FE(32.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAACCAGCAGATCAAGGCC
R:
CCGCACTTTTGTCTACGCTCT
Band lengths:
244-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types