GgaEX0017153 @ galGal3
Exon Skipping
Gene
ENSGALG00000011389 | TRAF3
Description
NA
Coordinates
chr5:52371657-52378296:+
Coord C1 exon
chr5:52371657-52371731
Coord A exon
chr5:52373550-52373642
Coord C2 exon
chr5:52378156-52378296
Length
93 bp
Sequences
Splice sites
3' ss Seq
TAAATTCTTTGTTGTCACAGGGA
3' ss Score
6.74
5' ss Seq
AAGGTATAT
5' ss Score
7.84
Exon sequences
Seq C1 exon
TTGAATGCACATTTGTCAGAATGTATTAATGCCCCAAGTACCTGTAGTTTTAAGCGTTATGGCTGCACTTTTCAG
Seq A exon
GGAACAAACCAACAAATTAAAGCACATGAAGCCAGCTCAGCAGTGCAGCATGTTAACTTATTGAAAGAGTGGAGCAATGCTCTAGAAAATAAG
Seq C2 exon
GTGGCCTTGCTCCAGAATGAAAGTTTGGAAAAGAACAAGAGTATACAAACTTTACATAATCAGATTTGTAGCTTTGAAATAGAAATTGAAAGACAGAAGGAAATGCTACGGAATAATGAATCTAAAATACTTCATTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011389-'13-18,'13-16,14-18
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0314511=Sina=FE(38.1=100),PF041569=IncA=FE(14.1=100),PF101744=Cast=PU(0.7=4.0)
A:
PF0314511=Sina=PD(39.7=80.6),PF041569=IncA=FE(17.6=100),PF0205011=FliJ=PU(5.0=16.1),PF101744=Cast=FE(21.9=100)
C2:
PF127182=Tropomyosin_1=FE(31.9=100),PF0205011=FliJ=FE(46.0=100),PF101744=Cast=FE(28.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTATTAATGCCCCAAGTACCTGT
R:
TTCCGTAGCATTTCCTTCTGTCT
Band lengths:
167-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]