Special

HsaEX0066805 @ hg38

Exon Skipping

Gene
Description
TNF receptor associated factor 3 [Source:HGNC Symbol;Acc:HGNC:12033]
Coordinates
chr14:102886189-102891417:+
Coord C1 exon
chr14:102886189-102886269
Coord A exon
chr14:102889560-102889634
Coord C2 exon
chr14:102891325-102891417
Length
75 bp
Sequences
Splice sites
3' ss Seq
ACGTCTCTTTCCCGTTGCAGTTG
3' ss Score
10.22
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
AAACACGAAGACACCGACTGTCCCTGCGTGGTGGTGTCCTGCCCTCACAAGTGCAGCGTCCAGACTCTCCTGAGGAGCGAG
Seq A exon
TTGAGTGCACACTTGTCAGAGTGTGTCAATGCCCCCAGCACCTGTAGTTTTAAGCGCTATGGCTGCGTTTTTCAG
Seq C2 exon
GGGACAAACCAGCAGATCAAGGCCCACGAGGCCAGCTCCGCCGTGCAGCACGTCAACCTGCTGAAGGAGTGGAGCAACTCGCTCGAAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000131323_MULTIEX2-4/7=3-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

Show structural model
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.057
Domain overlap (PFAM):

C1:
PF0217613=zf-TRAF=PD(1.8=3.7),PF0314511=Sina=PU(15.4=37.0)
A:
PF0314511=Sina=FE(36.9=100)
C2:
PF0217613=zf-TRAF=PD(1.8=3.2),PF086146=ATG16=FE(22.2=100),PF101744=Cast=FE(19.5=100),PF0149614=V_ATPase_I=PU(7.7=45.2),PF0205011=FliJ=PU(5.1=16.1)


Main Inclusion Isoform:


Main Skipping Isoform:


Other Inclusion Isoforms:


Other Skipping Isoforms:
Other assemblies
Conservation
Chicken
(galGal4)
ALTERNATIVE
Chicken
(galGal3)
ALTERNATIVE
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACACGAAGACACCGACTGT
R:
CTTCTTTTCGAGCGAGTTGC
Band lengths:
174-249
Functional annotations
There are 1 annotated functions for this event
PMID: 24671418
The noncanonical nuclear factor _B (ncNF_B) pathway regulates the expression of chemokines required for secondary lymphoid organ formation and thus plays a pivotal role in adaptive immunity. Whereas ncNF_B signaling has been well described in stromal cells and B cells, its role and regulation in T cells remain largely unexplored. ncNF_B activity critically depends on the upstream NF_B-inducing kinase (NIK). NIK expression is negatively regulated by the full-length isoform of TNF receptor-associated factor 3 (Traf3) as formation of a NIK-Traf3-Traf2 complex targets NIK for degradation. The authors show that T cell-specific and activation-dependent alternative splicing generates a Traf3 isoform lacking exon 8 (Traf3DE8) (HsaEX0066805) that, in contrast to the full-length protein, activates ncNF_B signaling. Traf3DE8 disrupts the NIK-Traf3-Traf2 complex and allows accumulation of NIK to initiate ncNF_B signaling in activated T cells.


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • The Cancer Genome Atlas (TCGA)
  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains
  • Pre-implantation embryo development