HsaINT0171696 @ hg38
Intron Retention
Gene
ENSG00000131323 | TRAF3
Description
TNF receptor associated factor 3 [Source:HGNC Symbol;Acc:HGNC:12033]
Coordinates
chr14:102886189-102889634:+
Coord C1 exon
chr14:102886189-102886269
Coord A exon
chr14:102886270-102889559
Coord C2 exon
chr14:102889560-102889634
Length
3290 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
3' ss Seq
ACGTCTCTTTCCCGTTGCAGTTG
3' ss Score
10.22
Exon sequences
Seq C1 exon
AAACACGAAGACACCGACTGTCCCTGCGTGGTGGTGTCCTGCCCTCACAAGTGCAGCGTCCAGACTCTCCTGAGGAGCGAG
Seq A exon
GTAGGGGCGGCCGGGCCCGGCCGGGAGTCTGTGGAGTCCTCAGGGCTGCGTGCCTGGCTCCCCTTCCCTGCATAGCCGAAGCCTCACGTTTTCCCAGTTCGTGAGAGTCATGTGTATGGCAGACAAACAAAAACCACAGCAAAAAGCCTTATGCCATTTTTTGGAAGTCAGAAGCAAGCATTAGGGTTAAAAGCTACAGTGTATGGCCGGGCACAGTGGCTCACACCTGTAATCCCAGCACTTTTGGAGGCCTAGGCAGATGGATCACCTGAGGTCAGGAGTTCAGAACCAGACTGGCCAATGTGCTGAAACCCCGTCTCTACTAAAAGTACAAAAACTAGCCAGGTGTGGTGGCGCGCACCTGTAATCCCAGCTATTCAGGAGGCCGAGGCAGGAGAATCATTTGAACCGGGGAGGCGGAGGTTGAACAGAGCCGAGATCACACCACTGCACTCCAGCCTGGGCAACAAGAGTTAAACTCCGTCTCAAAAACAAAACAAAACAAAACTACACTGTGGTAAATTCAGAGCAAAGATTGTGAAGCATTAAGAAAATGGGAATATTTTACATACAGTACAAGCAAAGGTGACGAGGGGTTTTTAAAGCAATTTTAACTCTATAGAATAGTAATTGCTGTAAGATTATCTCAAGAACATGAATTAACTTAGAGACACTTCAGAACCATTTTGCTCACACATGCCGGGTGGAGGACAGCTCCCACATTTTAGGGCTGCCAGAAGGGCCCCTGTGTGGCCTCTCCCAAAGGTTGCACGTCTCACATTGCGCTTGGCACTCTTTCTTTGAGACAGGTAGATTTTGCATTGACTTCACTTGATCAGGATATGTCCAGTTGGGAAAATTTCAAGGATTCTTAATGTTTCTGCATCTGTCCTGACGGGGAGCTCCTTTAGTTAGTATTCTGGGAGTCATCTGGGGCTACCCTGGGCTCCCTGGATGTGTGGTACGCTGATCTAAGGAGCCGGCTCACCTTTTCACCTCAGCATTTTTCAACAGCCTGAAATTTTACCACTGGATACTGGGTAACAGGGAGAACCAGCCTCGCATGCCCCTGACTGAGCAAGAGGGCCCATGTGGGGCTAGGGCCAGGGACTCAGGGTAGAGGAGGGCCCAGAGAGCCACTCTCCCCCAGGGTGTGCCCTCCCAGCACCTTGAAGCTGATGGGTGAGGGCAAAGTCTTGCCTGATGACAGTGGCCTCTGGGCCCTGAATCTGCCCCTGGGAGGAGCTAGGGAAAAATAAATGTAAATTATTGCCACAACTGGACAATCCTCTGTTAATGTATAAAGAGTCTGTGCTGTTGAAATAATTTCTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCACTCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCAGTGCATGCTCTGCCTCCTGGGTTCACACCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCTGCCACCACGCCCGGCTAATTTCTTGTATTTTTTAGTAGAGACGGGGTTTCACCTTGTTAGCCAGCATGGTCTCCGTCTCCTGACCTCGTGATTTGCCCGCCTCGGCCTCCTAAGGTGCTAGGATTACAGGTGTGAGCCACCGCGCCCGGCCAATAATTTCTTATTTAAAACATTGTTAAACCTGCATTTCTGTTGGGTTTCTGATGAAAGGTGCTTTTGAGCTATAGATTATTCTTGCCCCTATTCCAGAGATCCTGTAGATTCCCCGAGACTCAGAATACTGATAATAAAACCAATTTAGAAAAAGACCCAACACCGAATTTACTCTAGTACACTGAAAATAACATACATCAAACCCAGTGTGTCAGTGTGTCCCTGGCTTAACATGTAATAGCGTTGACACTCAGGTTTGTTATTGCAGTAATGACACTGGAAGAATACATTCCAAGTTTTTAAATGAACCTGGTTCTGCGCAGTCTTCACACTGCGTTTCCTTGCCAGTCACCTGTCACGTGCCTTGTGGGCGCTTCCTGCAGGGGCAGCCGGTCTGGGTTCTGAGGAGCAGCAAGGGCGTCAGGCTGCCAGGTTCCTACCACCTTGACTCTGCCCTGGCTCTGAGACCTTCCTTGAAGGTTGACCCTAGCAGTGGCCGCATGGGCCCCTCAGTCCCTTCCCGCAGTGTCCCTCCTCCTTAGTTTCGCAGCAGGGATCCATTTTCCCCTCTGTTGTAAATATCCACCTAGAGGGAAGGACCGCCTTTGTCCTGGTAGACTGAGAAGTTGTAGAACTTAGCTGCGCCCTCCAGGAGGATGTGCTCTATGAGCCTTGGGAACACATGCATGCTGGCACACAGAAGAACACATTCCCGGCTGCTGCACCCACACACCCATCCTCCCAAAAAGAGTCTGTTTTCTGTGAAGAAGATCTATCCCTAGAGTTTCCTGATGGGAATTTCTTCAATAAAAGACAAAACTTCTGCTCAGTCTTGGGGCATGATAAAGAAAAAGACCAAACTATACCTCATTTGTATTAGCCTAACACATGACTCTAAGTCCTTAAAATGTAATCCTTTCCATTCCCTTTTCTCTTGTTAGGGCATCATAAGTAATTTTTATTTGATAACTCACCAGCATTTGAGCTGAGCAAGGGACTTTTTTCTTGCAAAACGAGTTACCTGCTCCCAGCCCCACCTAATTTTCCTGCCATCAATTAGAGTTGACAGTAGTAAGAGTGTATGGTTAGACTGATCTTAGAGGTCTTTGAAAAGCTACCTGAGTTTCTGGCCCTTACAGAGGGAAAAAGTCTTTTCAGATGAAGGAAAAACTCATCTGCACTTATCTCAAGTATTATGAGTAATGGTACATTGTGTAAGCTTGCTTTGAAAATATATTTATTTTTGTGTACCGTATATTAGGTGTGTGACCCAGTTGCATTCTGAATGCTTTCTATTTTTTTGTGTTTTCATGCAATTTTTGTTTATGGTCTTTAAATGTGCATTTCAGTTTATGTTTTTTCTTTCTTTTTTAAATTCTGGCACTACAGATGGCATGTCACATTGAACAATTTGTTCTAAAGAAACTGGAAGTTTAAGAAATGTTATAGTAAATGTATTCTTGTATATTGGCGTATATGTGTATACACGTGACTAGACCGTATATTTACTGCATAGAAGTCTAGGCAGCAGATGATATATACACACCTGTAGCGATAAACACCATTCTTAATAGTACAGCTCAGATGCTATCTGTGCCCTAATATGTTTGAACATTTTCATGCAAACGTTTGTGCCACAACTCACGTCTCTTTCCCGTTGCAG
Seq C2 exon
TTGAGTGCACACTTGTCAGAGTGTGTCAATGCCCCCAGCACCTGTAGTTTTAAGCGCTATGGCTGCGTTTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000131323:ENST00000560371:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0217613=zf-TRAF=PD(1.8=3.7),PF0314511=Sina=PU(15.4=37.0)
A:
NA
C2:
PF0314511=Sina=FE(36.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains