DreEX6056089 @ danRer10
Exon Skipping
Gene
ENSDARG00000052917 | si:ch211-202f3.3
Description
si:ch211-202f3.3 [Source:ZFIN;Acc:ZDB-GENE-080917-19]
Coordinates
chr17:45595396-45597502:+
Coord C1 exon
chr17:45595396-45595468
Coord A exon
chr17:45597152-45597270
Coord C2 exon
chr17:45597369-45597502
Length
119 bp
Sequences
Splice sites
3' ss Seq
GTGTTGTTATTTTTCCTCAGGAA
3' ss Score
10.25
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
AAATTATATCCAGAAGCTGCTGAATTCGTTGTAGATACGGTGTCCAGGTTTGACTATGCCCAAGGGTTTATAG
Seq A exon
GAAACTGTTGGTTTCTGGCCTCTGTTGGTGCCTTAACATTTCAAAGCAAATTACTGCAAAAGGTTGTTCCAGATGGACAGTCACTCAGACACAATTACACTGGCTTATTTCACTTCAGG
Seq C2 exon
TTCTGGCGCTTTGGAAAATGGTTCGATGTAGTGATTGACGACAAGCTGCCAACAATCAATCGCCAGCTGATCTTTGTCAAATCTAAAACATATAATGAGTTCTGGCCAGCCTTGCTGGAGAAAGCATATGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052917-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(8.2=100)
A:
PF0064816=Peptidase_C2=FE(13.3=100)
C2:
PF0064816=Peptidase_C2=FE(15.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATCCAGAAGCTGCTGAATTCGT
R:
TTGGCATATGCTTTCTCCAGC
Band lengths:
202-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]