DreEX6057919 @ danRer10
Exon Skipping
Gene
ENSDARG00000034268 | slit3
Description
slit homolog 3 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-010306-4]
Coordinates
chr14:24236113-24239498:-
Coord C1 exon
chr14:24239427-24239498
Coord A exon
chr14:24236772-24236843
Coord C2 exon
chr14:24236113-24236276
Length
72 bp
Sequences
Splice sites
3' ss Seq
TTTTCATTCTTCTCTTTCAGAAC
3' ss Score
12.99
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
TATCCTGAGCTATAATCAAATACGCTGCGTCCCGGTTCATGCGTTTGATGGCTTGCGCTCTCTCCGCCTGCT
Seq A exon
AACTCTCCACGGAAATGACCTTTCAACTGTTCCGGAGGGAGCCTTCAACCACTTGACATCTCTATCTCATCT
Seq C2 exon
AGCTCTCGGTGCGAACCCTTTATACTGTGACTGTGAGCTGCGCTGGTTGTCTCAGTGGGTGAAGGCTGGCTTTAAAGAGCCTGGCATCGCCCGCTGCACTGGACCACCCGACATGGCTGACCGACTGCTGCTTACCACCCCCCTCAATCGCTTCCAGTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000034268-'28-27,'28-26,30-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=FE(40.0=100)
A:
PF138551=LRR_8=FE(40.0=100)
C2:
PF138551=LRR_8=PD(11.7=12.5),PF0146319=LRRCT=WD(100=46.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGATGGCTTGCGCTCTCTC
R:
GTGGTAAGCAGCAGTCGGTC
Band lengths:
167-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]