GgaEX0002329 @ galGal4
Exon Skipping
Gene
ENSGALG00000001916 | SLIT3
Description
slit homolog 3 protein precursor [Source:RefSeq peptide;Acc:NP_001183971]
Coordinates
chr13:3964935-3975860:+
Coord C1 exon
chr13:3964935-3965006
Coord A exon
chr13:3970931-3971002
Coord C2 exon
chr13:3975697-3975860
Length
72 bp
Sequences
Splice sites
3' ss Seq
CTGCTTCTCCACTCTTCTAGGAC
3' ss Score
10.87
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
CATCTTGAGCTACAACAGACTTCGGTGCATTCCAGTCCACGCGTTCAATGGGCTCAGGTCTCTTAGAGTGCT
Seq A exon
GACGCTCCACGGGAATGATATTTCCAGTGTTCCCGAAGGTTCATTCAACGACCTGGTGTCCCTGTCCCATCT
Seq C2 exon
GGCTCTAGGTACCAACCCTTTACACTGTGACTGCAACCTCCGCTGGCTTTCCGAGTGGGTGAAGGCAGGGTACAAAGAGCCAGGAATAGCCCGCTGCAGCGGGCCGGAAGCCATGGTGGACAGGCTGCTGCTCACAACACCAACCCACCACTTCCAGTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001916-'32-58,'32-56,34-58
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=FE(39.3=100)
A:
PF138551=LRR_8=FE(39.3=100)
C2:
PF138551=LRR_8=PD(11.5=12.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTTCAATGGGCTCAGGTCTC
R:
GTGGTGGGTTGGTGTTGTGAG
Band lengths:
182-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]