DreEX6058984 @ danRer10
Exon Skipping
Gene
ENSDARG00000038508 | chrnb3b
Description
cholinergic receptor, nicotinic, beta 3b (neuronal) [Source:ZFIN;Acc:ZDB-GENE-030102-4]
Coordinates
chr14:41155443-41159761:+
Coord C1 exon
chr14:41155443-41155487
Coord A exon
chr14:41158120-41158229
Coord C2 exon
chr14:41159692-41159761
Length
110 bp
Sequences
Splice sites
3' ss Seq
ATTATAATCTGGGTTTGCAGGAA
3' ss Score
6.74
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GATGAGAAAAACCAGCTCATGACCACTAATGTATGGCTGTATGAG
Seq A exon
GAATGGCTGGATTATAAACTGCGCTGGAACCCTGAGAATTATGGTGGGATCACATTTATCAGAGTCCCGTCAGAGAGCATCTGGCTCCCAGACATCGTTTTATATGAAAA
Seq C2 exon
CGCAGACGGACGTTTTGAAGGCTCGATCATGACCAAAGCCATCGTGAGATACAATGGCCTGATCACCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000038508-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.096
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(6.8=100)
A:
PF0293118=Neur_chan_LBD=FE(17.6=100)
C2:
PF0293118=Neur_chan_LBD=PD(55.1=38.6),PF0293211=Neur_chan_memb=WD(100=49.5),PF0293211=Neur_chan_memb=PU(61.2=17.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGAAAAACCAGCTCATGACCA
R:
CCAGGTGATCAGGCCATTGTA
Band lengths:
114-224
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]