RnoEX6055786 @ rn6
Exon Skipping
Gene
ENSRNOG00000012448 | Chrnb3
Description
cholinergic receptor nicotinic beta 3 subunit [Source:RGD Symbol;Acc:621544]
Coordinates
chr16:68880218-68887592:-
Coord C1 exon
chr16:68887548-68887592
Coord A exon
chr16:68881291-68881400
Coord C2 exon
chr16:68880218-68881100
Length
110 bp
Sequences
Splice sites
3' ss Seq
TGTATACCTGTTTCATGCAGGAA
3' ss Score
7.65
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GATGAAAAGAATCAGCTGATGACGACAAATGTGTGGCTGAAGCAG
Seq A exon
GAATGGACAGACCAAAAATTACGCTGGAATCCGGAAGAATATGGTGGAATTAATTCGATAAAGGTTCCATCAGAATCGCTCTGGCTGCCGGACATAGTTCTCTTTGAAAA
Seq C2 exon
TGCTGACGGACGTTTTGAGGGCTCCCTCATGACCAAGGCCATTGTGAAGTCCAGTGGAACCGTCAGCTGGACTCCTCCCGCCAGCTACAAGAGTTCCTGCACCATGGATGTCACATTTTTCCCGTTCGACAGGCAGAACTGCTCGATGAAGTTTGGATCCTGGACTTACGACGGTACCATGGTTGACCTCATTCTAATCAATGAAAACGTTGACCGGAAAGACTTTTTTGATAACGGAGAGTGGGAGATACTCAACGCAAAGGGGATGAAGGGCAACAGAAGAGAAGGCTTTTACTCCTATCCGTTTGTTACCTACTCTTTTGTCCTGAGACGCCTGCCCTTGTTTTACACGCTCTTTTTGATAATCCCCTGCCTGGGGTTGTCTTTTCTCACGGTCCTGGTGTTCTACCTACCCTCGGACGAAGGGGAAAAACTCTCATTATCCACCTCCGTTTTGGTCTCTTTGACGGTGTTTCTTTTAGTGATTGAAGAAATAATCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012448-'6-5,'6-4,9-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.027
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(23.7=100)
A:
PF0293118=Neur_chan_LBD=FE(17.6=100)
C2:
PF0293118=Neur_chan_LBD=PD(55.1=38.3),PF0293211=Neur_chan_memb=WD(100=42.4),PF0293211=Neur_chan_memb=PU(62.1=18.3)
Main Skipping Isoform:
ENSRNOT00000016656fB3114
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACAAATGTGTGGCTGAAGC
R:
AGTCTTTCCGGTCAACGTTTTCA
Band lengths:
247-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]