DreEX6058986 @ danRer10
Exon Skipping
Gene
ENSDARG00000038508 | chrnb3b
Description
cholinergic receptor, nicotinic, beta 3b (neuronal) [Source:ZFIN;Acc:ZDB-GENE-030102-4]
Coordinates
chr14:41151553-41155487:+
Coord C1 exon
chr14:41151553-41151604
Coord A exon
chr14:41151885-41152033
Coord C2 exon
chr14:41155443-41155487
Length
149 bp
Sequences
Splice sites
3' ss Seq
TAATGTGTGTGTTTCAACAGCTA
3' ss Score
8.08
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
TTAAGTGCTCTTGTCCTCATTTGAGGTCAGTAAACAGTTTGTGGAGGACACA
Seq A exon
CTAGAGAGTTTGTATCTCTGGCAGAAAGAGAAGATGCTCTGCTCAGGGACTTGTTTCAGGGGTACCAGCGTTGGGTCAGGCCCATTCTGCACGCAAACCACACTGTGAAGGTGCGCTTTGGCTTGAAGATCTCTCAGCTTGTGGACGTG
Seq C2 exon
GATGAGAAAAACCAGCTCATGACCACTAATGTATGGCTGTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000038508-'1-3,'1-1,2-3=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0293118=Neur_chan_LBD=PU(19.0=78.0)
C2:
PF0293118=Neur_chan_LBD=FE(6.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTGCTCTTGTCCTCATTTGAGG
R:
ACAGCCATACATTAGTGGTCATGA
Band lengths:
90-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]