RnoEX0021227 @ rn6
Exon Skipping
Gene
ENSRNOG00000012448 | Chrnb3
Description
cholinergic receptor nicotinic beta 3 subunit [Source:RGD Symbol;Acc:621544]
Coordinates
chr16:68887548-68913628:-
Coord C1 exon
chr16:68913434-68913628
Coord A exon
chr16:68898196-68898368
Coord C2 exon
chr16:68887548-68887592
Length
173 bp
Sequences
Splice sites
3' ss Seq
CTGCTGCTCTTTTAATTCAGGTT
3' ss Score
9.62
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
TGACTATTTTCATCAGGCAGCTGGTCACGGTCCCCTTGGGTTTCATCAGGCTTTGAACCACTCACATTTTGTTTTTTTAAACCCTGATCCTTTCCAGTGGAAACACTCTGCGCTTGAAAGGAAAATGTCTCTCTGAAGCAGACGTCATGACAGGCTTCCTAAGGGTCTTCTTGGTTCTCAGTGCCACTCTCTCAG
Seq A exon
GTTCCTGGGTGACTCTTACGGCCACTGCAGGACTCAGCTCAGTGGCTGAACACGAAGACGCACTCCTCAGACATTTGTTCCAAGGTTACCAGAAATGGGTCCGCCCTGTGTTGAATTCCAGTGACATCATAAAAGTGTATTTTGGATTAAAAATATCCCAGCTTGTGGATGTG
Seq C2 exon
GATGAAAAGAATCAGCTGATGACGACAAATGTGTGGCTGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012448-'0-1,'0-0,3-1
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0293118=Neur_chan_LBD=PU(19.0=67.2)
C2:
PF0293118=Neur_chan_LBD=FE(23.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTCATCAGGCAGCTGGTCA
R:
CTGCTTCAGCCACACATTTGT
Band lengths:
234-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]