DreEX6058994 @ danRer10
Exon Skipping
Gene
ENSDARG00000056018 | itga6l
Description
integrin, alpha 6, like [Source:ZFIN;Acc:ZDB-GENE-040914-57]
Coordinates
chr14:41180800-41182189:-
Coord C1 exon
chr14:41182062-41182189
Coord A exon
chr14:41180947-41181036
Coord C2 exon
chr14:41180800-41180864
Length
90 bp
Sequences
Splice sites
3' ss Seq
TGAATACATTCTTTTTTAAGGAC
3' ss Score
8.09
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
Exon sequences
Seq C1 exon
GTTTTAGATGCTGGAGATCATAGCATCAAATTGTTTGGTTATTCCTTGGCTGGAAACATGGATATGGACAGTAATGGCTATCCAGAGCTGGCTGTGGGTTCATTCTCAGATACTGTGCTGATTTACAG
Seq A exon
GACTAAGCCAGTGATAAACATAGAAAAGACCTTAACATTAACACCAAATAAGATTGACTTCAAGGCACAGGACTGCAAGAGAAAACCATG
Seq C2 exon
CATTATTACAGCTCAATCCTGCTTCACCTACACAACTGAGCCGCAAACATACAATCCCAAACTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056018-'10-11,'10-10,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0183918=FG-GAP=WD(100=72.1)
A:
PF084417=Integrin_alpha2=PU(6.2=93.5)
C2:
PF084417=Integrin_alpha2=FE(4.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGGAGATCATAGCATCAAA
R:
TTTGCGGCTCAGTTGTGTAGG
Band lengths:
167-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]