DreEX6058993 @ danRer10
Exon Skipping
Gene
ENSDARG00000056018 | itga6l
Description
integrin, alpha 6, like [Source:ZFIN;Acc:ZDB-GENE-040914-57]
Coordinates
chr14:41180947-41182701:-
Coord C1 exon
chr14:41182610-41182701
Coord A exon
chr14:41182062-41182189
Coord C2 exon
chr14:41180947-41181036
Length
128 bp
Sequences
Splice sites
3' ss Seq
ATTGTTATTTCTGTTTATAGGTT
3' ss Score
9.2
5' ss Seq
CAGGTTGAA
5' ss Score
1.26
Exon sequences
Seq C1 exon
ATTTTGCATCCAGTGCACCAAATGAGGATTCAGGGAGAGGTCGAGTGTATATTTACCATGGTTCAGCTGCAGGATTTCATCACAAACCAACG
Seq A exon
GTTTTAGATGCTGGAGATCATAGCATCAAATTGTTTGGTTATTCCTTGGCTGGAAACATGGATATGGACAGTAATGGCTATCCAGAGCTGGCTGTGGGTTCATTCTCAGATACTGTGCTGATTTACAG
Seq C2 exon
GACTAAGCCAGTGATAAACATAGAAAAGACCTTAACATTAACACCAAATAAGATTGACTTCAAGGCACAGGACTGCAAGAGAAAACCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056018-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.161 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF135171=VCBS=PD(3.8=9.7)
A:
PF0183918=FG-GAP=WD(100=72.1)
C2:
PF084417=Integrin_alpha2=PU(6.2=93.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCAGTGCACCAAATGAGGA
R:
TTTCTCTTGCAGTCCTGTGCC
Band lengths:
170-298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]